PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF276900020CFD_t1
Common NameTRAES_3BF276900020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 428aa    MW: 44779.1 Da    PI: 6.1751
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF276900020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.1e-07326366954
                              HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                               r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  TRAES3BF276900020CFD_t1 326 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 366
                              69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-11323371No hitNo description
SuperFamilySSF474592.88E-13323377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-11325375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-5326366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDPGFCNDMI LSESAWNSGG GDGGAAGDVV NVVDGSGMSV LERLVLDEAL AAAIMELQGI  60
QVPCGGGKPM AGGIEAASLA FGATGTGPVT PAYAEVDGVV LQRQQHQHRH QGVMGMPVDY  120
DLVPAARAVT LATVPAAPSF PKGAAAAVDR AGVADAAVFD SGNNAPASAV IAGMTRQWDE  180
ANGCAKRQRR SSRKRRAADA PCPAADGHSQ ENPLCSLLAS TNTGDRGIQI AFSSGGGAAP  240
SSKRTKPSLS STSSSISFDG RSSVNNGCDD VPQYEPDTEA LAQVKEMIYR AAAMRPLSLG  300
AEEEDTGERP SRRNVRISSD PQTVAARQRR ERISERLRVL QKLVPGGAKM DTASMLDEAA  360
NYLRFLKSQI RELQTLDRRN YGANAISNTG MAPMMSYNNM PAFAFPATGA GETLGRGGEE  420
AFISSRFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326331RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201013.10.0transcription factor SPATULA-like isoform X1
RefseqXP_020201014.10.0transcription factor SPATULA-like isoform X2
TrEMBLA0A077S0R90.0A0A077S0R9_WHEAT; Uncharacterized protein
STRINGBRADI2G41390.11e-125(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.17e-34bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]