PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF267500050CFD_t1
Common NameTRAES_3BF267500050CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 721aa    MW: 81512.8 Da    PI: 8.1719
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF267500050CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.23.1e-1003387091374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL++cA+avs ++++la+ +L+ +++++sp+gd +q la+y++  L+ r+++++s++ + + +++ s    +  l+ ++l + 
  TRAES3BF267500050CFD_t1 338 LRTLLIHCAQAVSVNNHSLASDILKSIRHHSSPSGDDTQSLAFYLADCLEIRMSGNGSQINRNFITTPRS---AAYILKLFHLCFT 420
                              6789*********************************************************999888887...89999999***** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              vs +lk s+   N++Il+  +g+++vHiiDf+i  G+QWp+Ll+++a+R++gpp+lRiTg++ p +g     + ++t+ rL ++A 
  TRAES3BF267500050CFD_t1 421 VSHYLKSSYYFSNKTILDVSKGKSHVHIIDFGICFGFQWPSLLKQFADREGGPPKLRITGIELPMPGfrPDGRKNSTQLRLLEYAG 506
                              *****************************************************************999999999************ PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                               ++vp+e++  +++++e++++e+L++++gE+l+Vn++ +++++ de+ s++s+r++vL+++k ++P+v+++   +  +n++ Fl r
  TRAES3BF267500050CFD_t1 507 MFKVPLEYRQ-ISSKWESISIEDLNINKGEVLVVNCINRMKNIADETISINSARNRVLNTIKMMKPRVFIHGVVNGYYNNPFFLSR 591
                              **********.7************************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f e +++y++lfd+l+++ pr++e+r  +Er + + ei nv+aceg+er+er e++++W+ r  +a F+++pl+ k++k +++++r
  TRAES3BF267500050CFD_t1 592 FKEVMHHYASLFDMLDKTTPRDNETRLILERDIYKYEILNVIACEGSERIERPESYKEWKVRSLRARFEQLPLNPKIVKGIQHIVR 677
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +++ +   v+ee + lvlgWk+r ++++S W+
  TRAES3BF267500050CFD_t1 678 QIYHKDLFVDEEGQFLVLGWKGRIVYALSTWK 709
                              ***88899***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.137312689IPR005202Transcription factor GRAS
PfamPF035141.1E-97338709IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MGTSDKPSSA DFHGIMANTA CCSAYCSQDF IESSTAKYNH SEFILHPPTP MSNYPALSIA  60
ANKIAPQFCN VSCDDTSAGC RLTSVVEHPR TDSDVTLSYI EQMLMQDIDD KVRAPHGETA  120
IRTMEEPFYE LLGQKYPVLP DVTLCGCGRL ENLNGNGSSL NGQVCCNCSV YVSSDDYHPN  180
ENSQTSQAPW TLSTTVGEAK QFPLGAERME IGLNINGLSI AKKPSRDYHS PHMNNRDTMK  240
DASFEVRGRK VYPGIEELDL LEGRRKKQIA FSSDEPARNE AFDKVLLCSD QKPIDEGIIS  300
QRTMADTSTK YAQKDQGRKP ARQKKGGKTR KKKEVVDLRT LLIHCAQAVS VNNHSLASDI  360
LKSIRHHSSP SGDDTQSLAF YLADCLEIRM SGNGSQINRN FITTPRSAAY ILKLFHLCFT  420
VSHYLKSSYY FSNKTILDVS KGKSHVHIID FGICFGFQWP SLLKQFADRE GGPPKLRITG  480
IELPMPGFRP DGRKNSTQLR LLEYAGMFKV PLEYRQISSK WESISIEDLN INKGEVLVVN  540
CINRMKNIAD ETISINSARN RVLNTIKMMK PRVFIHGVVN GYYNNPFFLS RFKEVMHHYA  600
SLFDMLDKTT PRDNETRLIL ERDIYKYEIL NVIACEGSER IERPESYKEW KVRSLRARFE  660
QLPLNPKIVK GIQHIVRQIY HKDLFVDEEG QFLVLGWKGR IVYALSTWKP SESNNEGTAD  720
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-403427098375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317332RKPARQKKGGKTRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153698.10.0scarecrow-like protein 9
TrEMBLA0A077RPZ90.0A0A077RPZ9_WHEAT; Uncharacterized protein
STRINGEMT162580.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117882640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-141GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]