PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF267500030CFD_t1
Common NameTRAES_3BF267500030CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 715aa    MW: 81106.7 Da    PI: 7.435
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF267500030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3534.7e-1083357061374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL++cAeavs ++ +la+ +L+ +++++sp+gd +qRla+y++  L+ rl++s+s++ +++ +++t+    ++ l+  +l + 
  TRAES3BF267500030CFD_t1 335 LRSLLIHCAEAVSVNNRSLASDILKSIRQHCSPSGDDTQRLAFYLADCLEIRLSGSGSHINQKVITTPTN---AAHILKLCHLCFT 417
                              689**********************************************************999988887...8999999999*** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              v+P+l+ s+ + N++Il+  +g+ rvHiiDf+i +G+QWp+Ll+++++R++gpp+lRiTg++ p++g    e+ ++t+ rL+++A+
  TRAES3BF267500030CFD_t1 418 VCPYLRSSYYLSNKTILDVSKGKPRVHIIDFGIFYGFQWPSLLKQFSDREGGPPKLRITGIELPTPGfrPDEMNKNTRLRLTEYAD 503
                              ******************************************************************9*88899999********** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                               ++vp+e++  +++++e++++eeL+++++E+l+Vn++l+++++ de+ +++ +r++vL++++ ++P+++++   + ++n++ Fl r
  TRAES3BF267500030CFD_t1 504 IFQVPLEYQQ-ISSKWESISIEELNIDKDEVLVVNCILRMKNVGDETITIDCARNRVLNTIRMMKPTIFIHGVVNGSYNTPFFLSR 588
                              **********.7************************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f e +++y+++fd+l+++ pr++e+r+ +Er + + +i n++aceg+er+er e+++kW++r  +a F+++pl+ +++k +++++r
  TRAES3BF267500030CFD_t1 589 FKEVMYHYTSMFDMLDKTTPRDNETRMILERDIYKYAILNAIACEGSERIERPESYKKWNARSVRARFEQLPLNPTIVKGIQSMVR 674
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +++ + + v+ee+++lvlgWk+r L+++S W+
  TRAES3BF267500030CFD_t1 675 QIYHKDFFVDEEDQCLVLGWKGRILYALSTWK 706
                              ***888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.64309686IPR005202Transcription factor GRAS
PfamPF035141.6E-105335706IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MANTAGCGAY CSQEFIESST AKYNDSEFIL HPPAPMSYYP QLSIVSNKVG RVSWDTSSSC  60
KIYSPQLYSV NCDETSAGWR LISVAEHPKT DSDVTLSHIE QMLMQDTDDK VRAPPGETAI  120
RTMEEPFYEL LGQKYPVLPG LLPLCGCDRL KNLNGSVCRL NNGQLCNNCS VKISSDNYHS  180
NGSSQASQAP WSLSAIVGEA IQFPLGVEKM GIGLNINGLS ISPESHSPHM NDKDTIKHAP  240
FHGRSRKVFP GIEELDLLEG RRNKQIAIFS DEPVRNEVFD KVLLCSENKP VDEDIILQRG  300
MADISTKYAQ KEQGRKPARR MKRGKTRKKK EVVDLRSLLI HCAEAVSVNN RSLASDILKS  360
IRQHCSPSGD DTQRLAFYLA DCLEIRLSGS GSHINQKVIT TPTNAAHILK LCHLCFTVCP  420
YLRSSYYLSN KTILDVSKGK PRVHIIDFGI FYGFQWPSLL KQFSDREGGP PKLRITGIEL  480
PTPGFRPDEM NKNTRLRLTE YADIFQVPLE YQQISSKWES ISIEELNIDK DEVLVVNCIL  540
RMKNVGDETI TIDCARNRVL NTIRMMKPTI FIHGVVNGSY NTPFFLSRFK EVMYHYTSMF  600
DMLDKTTPRD NETRMILERD IYKYAILNAI ACEGSERIER PESYKKWNAR SVRARFEQLP  660
LNPTIVKGIQ SMVRQIYHKD FFVDEEDQCL VLGWKGRILY ALSTWKPSEC EDEDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-433397068375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314329RKPARRMKRGKTRKKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153699.10.0scarecrow-like protein 9
TrEMBLA0A077RVM10.0A0A077RVM1_WHEAT; Uncharacterized protein
STRINGTRIUR3_06560-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117882640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-137GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]