PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF265800070CFD_t1 | ||||||||
Common Name | TRAES_3BF265800070CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 114aa MW: 12697.4 Da PI: 4.7629 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.7 | 4.1e-08 | 73 | 97 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + G C+ G+rC+FaHg TRAES3BF265800070CFD_t1 73 QKTELCNKWEG-GACSCGGRCRFAHG 97 69*******98.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-9 | 69 | 100 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-5 | 72 | 98 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.249 | 72 | 99 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.88E-6 | 72 | 100 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 73 | 97 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MDFFRILENA FSVWFRLNCC PTVPAQPPNV LCLGRAFFQL LYWFSLHTDQ AGVDEAKGDG 60 EVVELEAYRQ GTQKTELCNK WEGGACSCGG RCRFAHGLQD DGFLISLTNQ GVQG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-106 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A077S0M5 | 2e-79 | A0A077S0M5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Q1F1 | 2e-79 | A0A446Q1F1_TRITD; Uncharacterized protein | ||||
STRING | Traes_3B_9441F2297.1 | 6e-40 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 8e-14 | C3H family protein |
Publications ? help Back to Top | |||
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