PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF183400010CFD_t1 | ||||||||
Common Name | TRAES_3BF183400010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 305aa MW: 32813.1 Da PI: 5.0411 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.5 | 2.4e-08 | 164 | 188 | 7 | 30 |
HHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 7 erErrRRdriNsafeeLrellPk.a 30 ++ErrRR+r+N++++ Lr+ +Pk + TRAES3BF183400010CFD_t1 164 MAERRRRKRLNDRLSMLRSTVPKiS 188 79********************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.74E-6 | 153 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-6 | 164 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-6 | 164 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MDPLDEESFL DELMPLQREE APALTYQGSN GMMTISDLLF YGGEACTAEE SSSVGFVWPF 60 QQPMPPSPPA ARPHPPNQEF NFNYLSEVCN PWRSYIPDPP AVVQAAAGKG PLTLPLHDAL 120 ASSSTFVFGG GDGESLGMRS MPAFGTHPES KLNAGSGTPS KNLMAERRRR KRLNDRLSML 180 RSTVPKISKI GATPEELNLL KNFSSGGNEE TPTRSSTKVC ANVENRGGGD TKIEIFCSTN 240 PGALIATVTA LDVLGLEIKQ CVVSCFSDFA MQASCSQAEG KRQVISTDEI KQALLRSVGY 300 GGRCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 172 | ERRRRKRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150230.1 | 1e-104 | transcription factor bHLH61-like | ||||
TrEMBL | A0A077RPV4 | 0.0 | A0A077RPV4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PLX0 | 0.0 | A0A446PLX0_TRITD; Uncharacterized protein | ||||
STRING | TRIUR3_23651-P1 | 1e-180 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 2e-38 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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