PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF177400020CFD_t1 | ||||||||
Common Name | TRAES_3BF177400020CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 335aa MW: 36668.2 Da PI: 8.3118 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38 | 2.7e-12 | 261 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+y d+C+FaHg TRAES3BF177400020CFD_t1 261 FKTELCNKWEETGACPYCDQCQFAHG 286 79***********************9 PP | |||||||
2 | zf-CCCH | 18.3 | 4.1e-06 | 299 | 324 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr + + C+yG rC+F H+ TRAES3BF177400020CFD_t1 299 YKTEVCRMVLNGEVCPYGHRCHFRHS 324 9******999966**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-17 | 255 | 293 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-9 | 257 | 292 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-7 | 260 | 287 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.427 | 260 | 288 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-9 | 261 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-12 | 294 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-8 | 295 | 325 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 298 | 325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.807 | 298 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MQEALVSPAN ADRLRSAFEL KPYAFGDQRL SSSPRYLPGG DDGLYRCSSP FSPSLGFSSP 60 SPLTTSVSLS PSSSGSLVDD GDYDGAAAAD ATGHRLQLAR LALQYQEVAD RYELCLSHLA 120 EAVDEAAILR RENAELRVAN NDLARRVAVL GGKETAAVVI ADEIRRFRLG EHKGASKQRA 180 PEKLAVLPKS ISVRSNDYLK MNQAAPAAAT PAAYNRKPSS HLDRQQRAYA GLGADGGKKG 240 EEQKTKQDAA GELDVYNQGM FKTELCNKWE ETGACPYCDQ CQFAHGVSEL RPVIRHPRYK 300 TEVCRMVLNG EVCPYGHRCH FRHSLTAAER LLRSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 1e-21 | 261 | 324 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360544 | 0.0 | AK360544.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120C13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154780.1 | 0.0 | zinc finger CCCH domain-containing protein 9-like isoform X1 | ||||
Swissprot | A2ZVY5 | 1e-129 | C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9 | ||||
TrEMBL | A0A077RSU6 | 0.0 | A0A077RSU6_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_5666.3 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2775 | 37 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 3e-57 | C3H family protein |
Publications ? help Back to Top | |||
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