PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF177400020CFD_t1
Common NameTRAES_3BF177400020CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 335aa    MW: 36668.2 Da    PI: 8.3118
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF177400020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.7e-12261286126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +ktelC+ + +tG C+y d+C+FaHg
  TRAES3BF177400020CFD_t1 261 FKTELCNKWEETGACPYCDQCQFAHG 286
                              79***********************9 PP

2zf-CCCH18.34.1e-06299324126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ykte Cr  + +  C+yG rC+F H+
  TRAES3BF177400020CFD_t1 299 YKTEVCRMVLNGEVCPYGHRCHFRHS 324
                              9******999966**********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.2E-17255293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-9257292IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-7260287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.427260288IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9261286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-12294324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-8295325IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5298325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807298326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MQEALVSPAN ADRLRSAFEL KPYAFGDQRL SSSPRYLPGG DDGLYRCSSP FSPSLGFSSP  60
SPLTTSVSLS PSSSGSLVDD GDYDGAAAAD ATGHRLQLAR LALQYQEVAD RYELCLSHLA  120
EAVDEAAILR RENAELRVAN NDLARRVAVL GGKETAAVVI ADEIRRFRLG EHKGASKQRA  180
PEKLAVLPKS ISVRSNDYLK MNQAAPAAAT PAAYNRKPSS HLDRQQRAYA GLGADGGKKG  240
EEQKTKQDAA GELDVYNQGM FKTELCNKWE ETGACPYCDQ CQFAHGVSEL RPVIRHPRYK  300
TEVCRMVLNG EVCPYGHRCH FRHSLTAAER LLRSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21261324467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3605440.0AK360544.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154780.10.0zinc finger CCCH domain-containing protein 9-like isoform X1
SwissprotA2ZVY51e-129C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A077RSU60.0A0A077RSU6_WHEAT; Uncharacterized protein
STRINGMLOC_5666.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-57C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]