PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF169000100CFD_t1 | ||||||||
Common Name | TRAES_3BF169000100CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 28395.8 Da PI: 6.0876 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.5 | 1.5e-10 | 181 | 221 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rRR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq TRAES3BF169000100CFD_t1 181 KRRRERINEKLRVLQHLIPNG-----TKVDISTMLEEAVQYVKFLQ 221 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.684 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-14 | 171 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-13 | 172 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-11 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.22E-11 | 180 | 225 | No hit | No description |
Pfam | PF00010 | 9.0E-8 | 181 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEAKCAAIWS SVDGRSEESE MIAHLQSMFW SNSDAAVNLC SPSTSANSCV AASTVHSNLF 60 LPLDMESHIT TPMVNTGMDL CFDHRHQTVT GHKRTSHMDE QIKRTSQKSR TVPSVRVSDA 120 LCLSLADNET NGDTVNQSSS SCCSSEEDSI AASEESFVPN QGDNSRGCRR PSKNLQSLYA 180 KRRRERINEK LRVLQHLIPN GTKVDISTML EEAVQYVKFL QLQIKVLSSD ETWMYAPLAY 240 NGMDISLSLR ITAAQE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184287.1 | 1e-168 | transcription factor bHLH84-like | ||||
TrEMBL | A0A077RZI7 | 0.0 | A0A077RZI7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_7D31B4B09.1 | 1e-179 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14002 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 2e-44 | bHLH family protein |
Publications ? help Back to Top | |||
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