PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF153400050CFD_t1
Common NameTRAES_3BF153400050CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 661aa    MW: 72795.4 Da    PI: 6.6831
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF153400050CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002616638123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y C++C++ F r  nL+ H ++H
  TRAES3BF153400050CFD_t1 616 YLCEICNQGFQREQNLQMHRQRH 638
                              56*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078878.3E-40414562IPR012416CALMODULIN-BINDING PROTEIN60
Gene3DG3DSA:3.30.160.602.4E-4616638IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.367616638IPR007087Zinc finger, C2H2
PROSITE patternPS000280618638IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006950Biological Processresponse to stress
GO:0003676Molecular Functionnucleic acid binding
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MGVCGVLSDI ATVAQLSGLH AVMLIALAAH LLRIPKCETE CAKLEGCARK LHVLLDMATQ  60
HLAVAELVAG ALAEAADVVD SYRGSRLWRR VRTGRSMEAR LRDMRSRLDC LCTLVLCVHA  120
NLLTASASDT CGTIIHYTAL KLLILRILLA PREIFDPSMH IVVDEKYPDC LCLLADDWCR  180
NHHPLHGAEV SDSTSNSGSG TAVLLWAVAD EAAMLQRDAA REAAMLFLAA ADEAAVLHQD  240
AANEAVVFLR AAVDEAVVLH QAAAQASPKQ QQSTIFSANS NANLVVAKQH PLNATWGIPF  300
LDGKHFLKMC NQVLLQWDEP HVEVKKRWNF HDQLMPLYST HSGYYREDFP STSLMDKTHK  360
LLASISSDDS VWKIITSVTS RAAQTPQRRG VLIRPIEPYD SDDGPPIKKQ RTQYQLRFVN  420
TVSNDYFTRE KIKSEDGNLL KVALYDENNL VVTSGPLSSA SVEIVLLHGD FNAEGQDYWT  480
SEEFSACLVH PQSVKEPPAL GGDCGLALTD GEANLGSIKF QISSSHARTG KFIMGVEIKN  540
LREESVQEGI TSPFLVKVGL GEAIGTGEEM AETPFGSSLQ ITTTSAATKR KRRLAVTPDL  600
NADVVLLSPQ TLLDWYLCEI CNQGFQREQN LQMHRQRHKV PLKLLKREAG EPARKRVFVC  660
P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A080YUM80.0A0A080YUM8_WHEAT; Uncharacterized protein
STRINGTraes_3B_A7F590466.21e-166(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1537446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.12e-26indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]