PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF153400010CFD_t1 | ||||||||
Common Name | TRAES_3BF153400010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 804aa MW: 90283.9 Da PI: 7.0143 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 709 | 731 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k F + +L+ H ++H TRAES3BF153400010CFD_t1 709 YVCEICSKGFQSDQQLQLHRQSH 731 9*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07887 | 1.2E-20 | 69 | 213 | IPR012416 | CALMODULIN-BINDING PROTEIN60 |
Pfam | PF07887 | 5.8E-35 | 505 | 655 | IPR012416 | CALMODULIN-BINDING PROTEIN60 |
Pfam | PF12171 | 6.2E-5 | 709 | 731 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.575 | 709 | 731 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0036 | 709 | 731 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 711 | 731 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 748 | 778 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006950 | Biological Process | response to stress | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 804 aa Download sequence Send to blast |
MLKEKRKKDK NNHEEDLRVL KEDLTKLKKN QEELEIQIQE MRKEECAEVN HYKASPSQRS 60 QLSQSTRFRL VIENSVSRTI YKKGTIETED GGGHIKVVMY DGGNPIASNH RLASVRVEIV 120 VIEGGFDEKR DLWSKEEFEE SIMKPRRTTT LTSLVKNGTF NLIAGSCDHE GAIIMDNSQQ 180 REVKLGVRIT VPTETRVLEG VSNPFKVQEG KTKKPAPNKT GQGHFFFSKR VSPDEQKAVL 240 LPQNFPDRGK HSEFPTDGTA EDNQLSYPPA TVRLMVEGNG QALNGNSQQS SQQIPTPILW 300 QPTRTHPLQH DQGRSPPPPT KPNPLQVAGY YPPFPACRQD QCTSLPNASS QVAFPNLSGY 360 GLLDGQWNPI PGGEVFIEDL NHSNVQLPVE EYYVDASFTC NQVLLQWDTT HVEHKEHWNF 420 LDQFMPLYST QSRFYRQSFP STSLMDKAHK LLASISSGDS VLKMITSVTS QATQTPQRRG 480 VLVWPIEPYD SVHGPLVKKK RNTKYQLRFV NKVCDDYYTR ENIKSEDGNL LKVALYDENN 540 RVVTSGPLSS VSVEVVLLHG DFSAEGHEYW TSEEFSACLV HPQSVMSIAP ALGGHRVLAL 600 TCGEADLDNI NFRTSSFHAR SGKFVMGIEI RNVREESVQE GITNAFLVRV RQGEVTGTGE 660 EMAEPPFGLT LQTATTSDAT KRKPWPDRIL DQDPEVVSLS LQTLLLDMYV CEICSKGFQS 720 DQQLQLHRQS HNLPWKLKAG KAARKRVFVC PEPSCLHHDP SHALGGLVAI KKHFRREHSD 780 TATMPETAAP GLSPPTPAQG FEFW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A080YUN2 | 0.0 | A0A080YUN2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_A7F590466.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15374 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25250.1 | 9e-36 | indeterminate(ID)-domain 16 |
Publications ? help Back to Top | |||
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