PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF136000020CFD_t1
Common NameTRAES_3BF136000020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 225aa    MW: 25228.7 Da    PI: 7.6419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF136000020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.5e-1565117155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              r+++hn+ Er RR+++N+ ++ Lr+llP  +   + kK+s  +++ ++++YI +Lq
  TRAES3BF136000020CFD_t1  65 RKMSHNAYERDRRKQLNEQYSSLRSLLPDdD---HTKKMSIPTTVSRVINYIPELQ 117
                              799**************************44...6666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1762134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-1263120No hitNo description
PROSITE profilePS5088814.68464116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-1265117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-1565132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1070122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGHQHQMFND PFASSMSSLE EDMFSGAGGY HHLTPSMQWP GLDNDIPSAP AANNATSSGG  60
SGSHRKMSHN AYERDRRKQL NEQYSSLRSL LPDDDHTKKM SIPTTVSRVI NYIPELQKEV  120
DRLEKKKEEL RRGSCEQGAM RQNTAPIVSA TCLDDREIMV QVSLVSTMAG ALPMSKCIKV  180
LENQGLRLIN SSTSAFQNRT FYSLHLQVHV CLSVLLLWWS SMLMI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3712100.0AK371210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2128C09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193396.11e-149transcription factor ORG2-like
SwissprotA2WZ603e-75IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLA0A077RUB71e-168A0A077RUB7_WHEAT; Uncharacterized protein
TrEMBLA0A446QFT81e-168A0A446QFT8_TRITD; Uncharacterized protein
STRINGTraes_3B_2A12B8F93.21e-155(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.16e-32bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]