PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF135900010CFD_t1
Common NameTRAES_3BF135900010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 360aa    MW: 38095.4 Da    PI: 7.085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF135900010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11294339655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri +++ +L++l+P+     +k  + +++L  Av+YIk Lq
  TRAES3BF135900010CFD_t1 294 SIAERERRTRISKRLRRLQDLVPNM----DKQTNTSDMLDIAVDYIKVLQ 339
                              689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.922288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15291349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-12292343No hitNo description
Gene3DG3DSA:4.10.280.109.1E-15293350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-9294339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MPPPPQLARY GSAPGSFLAA LADSVSRGGG GGGGEVLSHS QSQQQHQQHQ PVAAVVSRFF  60
SGESSGLTSC ESSCWTADAP PPLQRAYGGS GEIHVPLPQQ QQPGLLRHSS SPAGLLSRLM  120
ADPHGNGGMG GTRGGGGMGS GYAHSHSQGG NADAMAAQQR RLSSQWSFSR QQDMMPHIAE  180
MGMAMPTPMP PAADVGESIA TGHGGGSSDL SRSFSMSSWD DTNSNIIFSA PGGGKKAKLM  240
ADGDDGMVTS FSNIDSQFGS SMDMPGMDDY LQLQQDSVAC RVRAKRGCAT HPRSIAERER  300
RTRISKRLRR LQDLVPNMDK QTNTSDMLDI AVDYIKVLQD QIEKLKQDQG NCSCSADQKC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3690830.0AK369083.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085A02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198304.10.0transcription factor bHLH128-like
TrEMBLA0A077S6530.0A0A077S653_WHEAT; Uncharacterized protein
TrEMBLA0A3B6FXS10.0A0A3B6FXS1_WHEAT; Uncharacterized protein
STRINGTraes_3B_9A9BF184C.11e-176(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-36bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]