PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRAES3BF130100030CFD_t1 | ||||||||
Common Name | TRAES_3BF130100030CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 27692.5 Da PI: 8.3874 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.3 | 1.8e-10 | 69 | 114 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR riN + Lr+++P k ++Ka+ L ++v+ +k+L TRAES3BF130100030CFD_t1 69 VHSEAERRRRVRINAHLTALRRMIPDT-----KQMDKAALLARVVDQVKHL 114 59************************9.....67***************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.087 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 68 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-13 | 69 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-8 | 69 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.46E-10 | 70 | 116 | No hit | No description |
SMART | SM00353 | 3.1E-10 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.0E-4 | 153 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MLGLMAAPCQ SPQAGNKLYD ECDPTVHGDR VLLPRQASSA SPAGPPEVST TSSSTGSGRS 60 ATEARALKVH SEAERRRRVR INAHLTALRR MIPDTKQMDK AALLARVVDQ VKHLKRRAGE 120 AAQQTPAVPP ETDEVSIEFC TGDDDSRLYM KASVSCDDRP DLVAGLIQAL HGLRLRTVRA 180 EVTSLGGRVQ HVFTLCKEED EEGSAAAGLA GLTSLKEAAR LALARVASPE LVCGGSPFQF 240 QSKRQRILES HYSIMSI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170465.1 | 1e-143 | putative transcription factor bHLH107 isoform X1 | ||||
Refseq | XP_020170466.1 | 1e-143 | putative transcription factor bHLH107 isoform X1 | ||||
TrEMBL | A0A446PGA6 | 0.0 | A0A446PGA6_TRITD; Uncharacterized protein | ||||
STRING | TRIUR3_07421-P1 | 1e-147 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3347 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56770.1 | 2e-32 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|