PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF118300070CFD_t1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 288aa    MW: 31383.7 Da    PI: 8.6472
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF118300070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.65.9e-13556147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                             ++rWT eE+  l+ +v+++G+g W+tI r          R+  ++k++w+++
  TRAES3BF118300070CFD_t1  5 KQRWTSEEEAALKAGVAKHGPGKWRTILRDTDfsavlRLRSNVDLKDKWRNL 56
                             79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.562161IPR017930Myb domain
SuperFamilySSF466898.61E-15259IPR009057Homeodomain-like
SMARTSM007175.4E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-13556IPR009057Homeodomain-like
PfamPF002495.5E-9556IPR001005SANT/Myb domain
CDDcd116607.40E-18656No hitNo description
Gene3DG3DSA:1.10.10.101.6E-16122193IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.68E-16122195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.7E-12123186IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.935123191IPR005818Linker histone H1/H5, domain H15
PfamPF005384.5E-10128183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALKAGV AKHGPGKWRT ILRDTDFSAV LRLRSNVDLK DKWRNLSVTA  60
GGYGSREKAR MALKQGKRVP KVNIEPMDVD ADNLDNVHDT VIDAKPLAVV VEPSQRECSS  120
EKSVARLDDL ILEAIKKLKE SSGSNKTAIA SYIEEQYWPP ADFQRLLSTK LKALVATGKL  180
MKSNQKYRIA PSSVSLGGRS KDDKQNICIR QLTKPQVDAE LDMMTHMNKE EAAAFAAKAV  240
AEAEVANAEA EEAARAAEAA EAEAEAAKAF LDAVMLTVQN KNAASAVH
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519530.0JF951953.1 Aegilops tauschii clone TaMYB70 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160049.11e-173single myb histone 2-like
SwissprotB4FT401e-121SMH2_MAIZE; Single myb histone 2
TrEMBLA0A446PSB41e-176A0A446PSB4_TRITD; Uncharacterized protein
STRINGTraes_3B_FB63C505B.21e-172(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.37e-67telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]