PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF117500140CFD_t1 | ||||||||
Common Name | TRAES_3BF117500140CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 178aa MW: 19999.7 Da PI: 6.5126 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.7 | 0.00047 | 103 | 130 | 6 | 35 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TT CS HLH 6 nerErrRRdriNsafeeLrellPk.askaps 35 +++Er RR+ +++ +L++ +P+ + ++ TRAES3BF117500140CFD_t1 103 SIAERERRASNSKRLRRLQDFVPNmD---KQ 130 689********************966...44 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MGMAMPALMP SADVDESITV DNGSNDLSRS FSISSSDDTN SIIMFSTPGS KKAKVLIDTD 60 GGMFGMLTTY LDMPGMDDYL QLQQDFIACT VHTKHGCATH PRSIAERERR ASNSKRLRRL 120 QDFVPNMDKQ TTMSDKDLEY LLISGERVAS RPKRPSSWWY PTPLGFFFFH AYTALAFF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-101 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198304.1 | 1e-50 | transcription factor bHLH128-like | ||||
TrEMBL | A0A077RVX3 | 1e-130 | A0A077RVX3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Q4R5 | 1e-130 | A0A446Q4R5_TRITD; Uncharacterized protein | ||||
STRING | Traes_3B_9A9BF184C.1 | 1e-51 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 4e-23 | bHLH family protein |
Publications ? help Back to Top | |||
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