PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF114600210CFD_t1 | ||||||||
Common Name | TRAES_3BF114600210CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 700aa MW: 73394.8 Da PI: 7.087 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.8 | 4.1e-11 | 262 | 318 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g TRAES3BF114600210CFD_t1 262 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 318 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 46.7 | 8e-15 | 361 | 412 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g TRAES3BF114600210CFD_t1 361 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 412 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.15E-17 | 262 | 328 | No hit | No description |
Pfam | PF00847 | 1.2E-8 | 262 | 318 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-14 | 262 | 328 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-21 | 263 | 332 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.28 | 263 | 326 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-11 | 263 | 327 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-6 | 264 | 275 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.89E-23 | 361 | 420 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-17 | 361 | 421 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.9E-10 | 361 | 412 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-33 | 362 | 426 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 362 | 420 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-18 | 362 | 420 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-6 | 402 | 422 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MATVNNWLGF SLSPQELPPS AAASGDVSGA DVCYNIPQDW NMRGSELSAL VAEPKLEDFL 60 GGISYSDHHH HQHKQPGGNN MVVPAGSASG GAACYANSGG SSVGYLYHPS SASLQFADSV 120 MVASSGGGVH HDGAGIMANT TANGDLNGGG GGGIGLSMIK SWLRSQPSPA QAQPPEQQRA 180 EAAAQGLSLS MNMAACIPPL VGGERGVPEL AIVRKDDTAG GSSAGSGAVV SAGADSTGGS 240 SGAVVETPAS RKTADTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ TRKGRQGGYD 300 KEEKAARAYD LAALKYWGAT TTTNFPVNNY EKELDEMKHM TRQEFVASLR RKSSGFSRGA 360 SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD 420 MTRYDVKSIL DSTALPIGSA AKRLKDKEAA TASSLALQQQ QHAGVVSGYD MGALAAYGAA 480 YHHHHPSVAG AVAWPTIAFQ TPPQQVSGGG GGHMYHPYAH AQPLRGWCKQ EPDHAVIAAA 540 HSLQELHHLN LGAGGGAHDF FSQHAQAMQQ QHGGLGSIDN GAGASLEHST GSNSVVYNNG 600 AVESYMLPMS TTTTAAVSHA HEQAAAHAHA RAVAAQAYSG GNMSRDHDDG KIAYENYLVS 660 TAEAYGGGRM AAWAPASAPP ATSSSDMTGT QLFSVWNDTN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151353.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A077RX08 | 0.0 | A0A077RX08_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Q7T4 | 0.0 | A0A446Q7T4_TRITD; Uncharacterized protein | ||||
STRING | EMT08990 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-117 | AP2 family protein |
Publications ? help Back to Top | |||
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