PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF114300070CFD_t1 | ||||||||
Common Name | TRAES_3BF114300070CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 412aa MW: 44534.9 Da PI: 9.2812 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159 | 2e-49 | 39 | 164 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg TRAES3BF114300070CFD_t1 39 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATG 123 79***************************.89***************8778899******************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ + +++++ +glkktLvfy+g+apkg++++W+m+eyrl TRAES3BF114300070CFD_t1 124 ADRMIRAESSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 164 ***************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.156 | 38 | 185 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.45E-55 | 38 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-24 | 40 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MSSRHEGGGH GAAAAAAGAG VCNIKEGGGR DAHEDDLVMP GFRFHPTEEE LIEFYLRRKV 60 EGKRFNVELI TFLDLYRYDP WELPALAAIG EKEWFFYVPR DRKYRNGDRP NRVTASGYWK 120 ATGADRMIRA ESSRPIGLKK TLVFYSGKAP KGVRSSWIMN EYRLPTADTD RYHKTEISLC 180 RVYKRTGIDD GRGHPSSARS TMPSRRGTAA AQQDNRQGSS STSTPTPPPT PSKLHLLQAG 240 ECTSPAPMTD HAQTHRPAAA PRQQLAATVK PSGGSIGYLQ STVAAGEHHQ QEGAAALLYQ 300 QYSKSTNTFA STYSLLNLVN AASMGVASAA AIDELSTLVG HGAAQLPSYH SPASSGGHHD 360 HFVVPLPTPP SQPITPLGTL PMSLAAISDK IWDWNPIPDA AVGRDYGGAS FK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-54 | 40 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-54 | 40 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-54 | 40 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-54 | 40 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-53 | 40 | 185 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-53 | 40 | 185 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-53 | 40 | 185 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-53 | 40 | 185 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-53 | 40 | 185 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-53 | 40 | 185 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-53 | 40 | 185 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-53 | 40 | 185 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-54 | 40 | 185 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-54 | 40 | 185 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR819762 | 0.0 | FR819762.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC012 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179754.1 | 0.0 | protein BEARSKIN2-like | ||||
TrEMBL | A0A077S5P1 | 0.0 | A0A077S5P1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Q904 | 0.0 | A0A446Q904_TRITD; Uncharacterized protein | ||||
STRING | MLOC_57215.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-104 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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