PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF114300070CFD_t1
Common NameTRAES_3BF114300070CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 412aa    MW: 44534.9 Da    PI: 9.2812
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF114300070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1592e-49391642128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                              +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg
  TRAES3BF114300070CFD_t1  39 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATG 123
                              79***************************.89***************8778899******************************** PP

                      NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               d+ + +++++ +glkktLvfy+g+apkg++++W+m+eyrl
  TRAES3BF114300070CFD_t1 124 ADRMIRAESSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 164
                              ***************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.15638185IPR003441NAC domain
SuperFamilySSF1019414.45E-5538184IPR003441NAC domain
PfamPF023651.5E-2440164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSSRHEGGGH GAAAAAAGAG VCNIKEGGGR DAHEDDLVMP GFRFHPTEEE LIEFYLRRKV  60
EGKRFNVELI TFLDLYRYDP WELPALAAIG EKEWFFYVPR DRKYRNGDRP NRVTASGYWK  120
ATGADRMIRA ESSRPIGLKK TLVFYSGKAP KGVRSSWIMN EYRLPTADTD RYHKTEISLC  180
RVYKRTGIDD GRGHPSSARS TMPSRRGTAA AQQDNRQGSS STSTPTPPPT PSKLHLLQAG  240
ECTSPAPMTD HAQTHRPAAA PRQQLAATVK PSGGSIGYLQ STVAAGEHHQ QEGAAALLYQ  300
QYSKSTNTFA STYSLLNLVN AASMGVASAA AIDELSTLVG HGAAQLPSYH SPASSGGHHD  360
HFVVPLPTPP SQPITPLGTL PMSLAAISDK IWDWNPIPDA AVGRDYGGAS FK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-544018519165NO APICAL MERISTEM PROTEIN
1ut4_B8e-544018519165NO APICAL MERISTEM PROTEIN
1ut7_A8e-544018519165NO APICAL MERISTEM PROTEIN
1ut7_B8e-544018519165NO APICAL MERISTEM PROTEIN
3swm_A1e-534018522168NAC domain-containing protein 19
3swm_B1e-534018522168NAC domain-containing protein 19
3swm_C1e-534018522168NAC domain-containing protein 19
3swm_D1e-534018522168NAC domain-containing protein 19
3swp_A1e-534018522168NAC domain-containing protein 19
3swp_B1e-534018522168NAC domain-containing protein 19
3swp_C1e-534018522168NAC domain-containing protein 19
3swp_D1e-534018522168NAC domain-containing protein 19
4dul_A8e-544018519165NAC domain-containing protein 19
4dul_B8e-544018519165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8197620.0FR819762.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC012 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179754.10.0protein BEARSKIN2-like
TrEMBLA0A077S5P10.0A0A077S5P1_WHEAT; Uncharacterized protein
TrEMBLA0A446Q9040.0A0A446Q904_TRITD; Uncharacterized protein
STRINGMLOC_57215.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-104NAC domain containing protein 35
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]