PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF113300120CFD_t1
Common NameTRAES_3BF113300120CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 384aa    MW: 41573.6 Da    PI: 4.9263
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF113300120CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.62.1e-38651641100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+l++l++e  + am++l+y+Ae+ra dPv G++++i +l++ 
  TRAES3BF113300120CFD_t1  65 ACAACKYQRRKCNPDCPLAPYFPADQQRRFLNAHRLFGVSNILKTLRRLKPELCDSAMQTLIYQAEMRAMDPVGGCCRMIIDLEHT 150
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                               e l+aela+l+++
  TRAES3BF113300120CFD_t1 151 SELLSAELAALQQH 164
                              **********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.41464165IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-3765162IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MTSSSAASSS HLHITITNNA SSTITTNTNN NTKSHHSSSV SPRSGSGGSG SGGGGGGGGG  60
TTNQACAACK YQRRKCNPDC PLAPYFPADQ QRRFLNAHRL FGVSNILKTL RRLKPELCDS  120
AMQTLIYQAE MRAMDPVGGC CRMIIDLEHT SELLSAELAA LQQHLDMCRQ AAASGVAGGD  180
VMDGPCADLE VTSSNHQQEQ LLLHADQDHH QALYIGQEGA DPVIQNGADH DDSRQPQYHG  240
GQQHQQQQLY DYFYYEATGA GSDEAGRKPS GSGVDINVDV MQHFDYDSSC EVDDHHKVDQ  300
LEPMISSSLD EHYQIGQKEY EMKVASFVDV LDVRPELQAV DGNADIGVKE ELQEEDPKNN  360
DDIALRKAAH MAAESSHCRL GLGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-226617112115LOB family transfactor Ramosa2.1
5ly0_B8e-226617112115LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15060SGGGGGGGGGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151955.10.0uncharacterized protein LOC109737153
TrEMBLA0A077S8J70.0A0A077S8J7_WHEAT; Uncharacterized protein
STRINGTRIUR3_30753-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-31LOB domain-containing protein 22
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]