PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF111700070CFD_t1
Common NameTRAES_3BF111700070CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 302aa    MW: 33827.2 Da    PI: 8.4072
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF111700070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.8e-1585180294
                              EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 
                              +k+l +sd +++gr+vlpkk  e++       ++ ++ l++ d ++ + W++k++y  ++ks++yvl+ ++ ++v+ ++L++gDf+
  TRAES3BF111700070CFD_t1  85 QKELRNSDISQLGRIVLPKKESEAYlpilT--SKDGRSLRMHDlLNAQLWTFKYRYwpNNKSRMYVLE-NTGDYVRTHNLRVGDFI 167
                              79999**********************653..445678*****8888*********89999999**99.***************** PP

                              EEEE-SSSEE..EE CS
                       B3  81 vFkldgrsefelvv 94 
                              +++ d++ + ++v+
  TRAES3BF111700070CFD_t1 168 MIYKDDD-KNRFVI 180
                              ***5554.433344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-1883181IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-2283185IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-2283184No hitNo description
PROSITE profilePS508639.29184186IPR003340B3 DNA binding domain
SMARTSM010191.6E-1184186IPR003340B3 DNA binding domain
PfamPF023621.3E-1185180IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAAISSSSSS SKRRSPSAST TSSSSGDGIG EYRPQLVTRK RRSGGRGPRG GVRWMPAIRP  60
VNELDLNRVA LDPNHQVAGL RVILQKELRN SDISQLGRIV LPKKESEAYL PILTSKDGRS  120
LRMHDLLNAQ LWTFKYRYWP NNKSRMYVLE NTGDYVRTHN LRVGDFIMIY KDDDKNRFVI  180
RAKKAGDDLV ASLPQFHEHI SSILPIPEVD DYVSLIPPPA DISAFVPQAD ENYEMFDGIF  240
NSLPEIPVAN VRYSDFFDPF SDCMDMSNPG LNANNSANLG SHFHDERTGL SLFPNPTSGP  300
LM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-42801881109B3 domain-containing transcription factor FUS3
6j9b_D2e-42801881109B3 domain-containing transcription factor FUS3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742TRKRRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751420.0AK375142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3086F07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179453.10.0B3 domain-containing protein LFL1-like
SwissprotA4LBC01e-124LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLA0A077S2P90.0A0A077S2P9_WHEAT; Uncharacterized protein
TrEMBLA0A446PV600.0A0A446PV60_TRITD; Uncharacterized protein
STRINGMLOC_15725.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-42B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  5. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]