PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF111600210CFD_t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 792aa MW: 88565.2 Da PI: 6.3685 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.6 | 2.5e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+lt sd++++g +++ +++a+e+ +++++ ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD TRAES3BF111600210CFD_t1 127 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDA 210 99*****************************7555544..58******************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 ++F + +++el+v+v+r+ TRAES3BF111600210CFD_t1 211 FIFL--RGESGELRVGVRRA 228 ****..449999*****996 PP | |||||||
2 | Auxin_resp | 106.4 | 3.3e-35 | 253 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tk++F+v+Y+Pr+s+seF+++++k+++++k+ +s+G+Rfkm+fe+e+++e+r++Gt+vg +ld+ Wp+S WrsLk TRAES3BF111600210CFD_t1 253 AWHAINTKTMFTVYYKPRTSRSEFIIPYDKYMDSVKNIYSIGTRFKMRFEGEEAPEQRFTGTIVGSDNLDQ-LWPESSWRSLK 334 89******************************************************************999.9********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.15E-39 | 120 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-39 | 121 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.03E-20 | 125 | 227 | No hit | No description |
Pfam | PF02362 | 3.2E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.843 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.5E-32 | 253 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.6E-5 | 651 | 706 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.24E-13 | 664 | 747 | No hit | No description |
PROSITE profile | PS51745 | 25.583 | 670 | 763 | IPR000270 | PB1 domain |
Pfam | PF02309 | 2.6E-8 | 711 | 755 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MPPAAMPPPP PPPQGDPLYD ELWHACAGPL VTVPRVGDMV YYFPQGHIEQ VEASMNQVAA 60 NQMRLYDLPS KLLCRVLNVE LKAEADTDEV YAQVMLMPEP ESDATTTEKS SPATGGTTPA 120 RPAVRSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMTQ SPPTQELVAK DLHGMEWRFR 180 HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGESGE LRVGVRRAMR QFSNIASSVI 240 SSHSMHLGVL ATAWHAINTK TMFTVYYKPR TSRSEFIIPY DKYMDSVKNI YSIGTRFKMR 300 FEGEEAPEQR FTGTIVGSDN LDQLWPESSW RSLKVRWDES STIPRPDRVS PWEIEPASSP 360 PVNPLPLSRA KRSRPNVPPA SPESSLRTKE GATKADMDCA QAQRNQNNTV LPGQEQRSNK 420 LTDINDFDAT VQKPMMWSPP PPNIGKTNPL TFQQRPSVHN SIQLGRRDAS SGAQPFGDSL 480 GFFMQTTFDE APNRLGSFKN QFQDHSYARQ FADPYRKMHT ENNDLHFWNG PSTVYGNSID 540 QAQDFRFKEH PSNWLSPQFS RAEQPRVIRP HASIAPIELE KTTEGSDFKI FGFKVDTASA 600 GFNHLNSPMA GTHEPVLQTQ PSVSLDHLQT DCSPEVSLSI AGTTENEKNM QQCPQSSKDV 660 QSKSHGASTR SCTKVHKQGV ALGRSVDLSK FVDYDELTAE LDKMFEFDGE LMSSNKNWQI 720 VYTDNEGDMM LVGDDPWEEF CSIVRKICIY TKEEVQKMNS KPSGPRKEEG SVDGDGATEK 780 AHLPESSDLN SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-167 | 16 | 359 | 17 | 357 | Auxin response factor 1 |
4ldw_A | 1e-167 | 16 | 359 | 17 | 357 | Auxin response factor 1 |
4ldw_B | 1e-167 | 16 | 359 | 17 | 357 | Auxin response factor 1 |
4ldx_A | 1e-167 | 16 | 359 | 17 | 357 | Auxin response factor 1 |
4ldx_B | 1e-167 | 16 | 359 | 17 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372798 | 0.0 | AK372798.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3013C04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197968.1 | 0.0 | auxin response factor 4-like | ||||
Swissprot | Q5JK20 | 0.0 | ARFD_ORYSJ; Auxin response factor 4 | ||||
TrEMBL | A0A3B6FZ54 | 0.0 | A0A3B6FZ54_WHEAT; Auxin response factor | ||||
STRING | EMT17168 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
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