PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF111600210CFD_t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 792aa    MW: 88565.2 Da    PI: 6.3685
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF111600210CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.5e-23127228199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD 
  TRAES3BF111600210CFD_t1 127 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDA 210
                              99*****************************7555544..58******************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              ++F   + +++el+v+v+r+
  TRAES3BF111600210CFD_t1 211 FIFL--RGESGELRVGVRRA 228
                              ****..449999*****996 PP

2Auxin_resp106.43.3e-35253334183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              a+ha++tk++F+v+Y+Pr+s+seF+++++k+++++k+ +s+G+Rfkm+fe+e+++e+r++Gt+vg  +ld+  Wp+S WrsLk
  TRAES3BF111600210CFD_t1 253 AWHAINTKTMFTVYYKPRTSRSEFIIPYDKYMDSVKNIYSIGTRFKMRFEGEEAPEQRFTGTIVGSDNLDQ-LWPESSWRSLK 334
                              89******************************************************************999.9********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-39120256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-39121242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-20125227No hitNo description
PfamPF023623.2E-21127228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843127229IPR003340B3 DNA binding domain
SMARTSM010194.2E-23127229IPR003340B3 DNA binding domain
PfamPF065078.5E-32253334IPR010525Auxin response factor
PfamPF023091.6E-5651706IPR033389AUX/IAA domain
SuperFamilySSF542773.24E-13664747No hitNo description
PROSITE profilePS5174525.583670763IPR000270PB1 domain
PfamPF023092.6E-8711755IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MPPAAMPPPP PPPQGDPLYD ELWHACAGPL VTVPRVGDMV YYFPQGHIEQ VEASMNQVAA  60
NQMRLYDLPS KLLCRVLNVE LKAEADTDEV YAQVMLMPEP ESDATTTEKS SPATGGTTPA  120
RPAVRSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMTQ SPPTQELVAK DLHGMEWRFR  180
HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGESGE LRVGVRRAMR QFSNIASSVI  240
SSHSMHLGVL ATAWHAINTK TMFTVYYKPR TSRSEFIIPY DKYMDSVKNI YSIGTRFKMR  300
FEGEEAPEQR FTGTIVGSDN LDQLWPESSW RSLKVRWDES STIPRPDRVS PWEIEPASSP  360
PVNPLPLSRA KRSRPNVPPA SPESSLRTKE GATKADMDCA QAQRNQNNTV LPGQEQRSNK  420
LTDINDFDAT VQKPMMWSPP PPNIGKTNPL TFQQRPSVHN SIQLGRRDAS SGAQPFGDSL  480
GFFMQTTFDE APNRLGSFKN QFQDHSYARQ FADPYRKMHT ENNDLHFWNG PSTVYGNSID  540
QAQDFRFKEH PSNWLSPQFS RAEQPRVIRP HASIAPIELE KTTEGSDFKI FGFKVDTASA  600
GFNHLNSPMA GTHEPVLQTQ PSVSLDHLQT DCSPEVSLSI AGTTENEKNM QQCPQSSKDV  660
QSKSHGASTR SCTKVHKQGV ALGRSVDLSK FVDYDELTAE LDKMFEFDGE LMSSNKNWQI  720
VYTDNEGDMM LVGDDPWEEF CSIVRKICIY TKEEVQKMNS KPSGPRKEEG SVDGDGATEK  780
AHLPESSDLN SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1671635917357Auxin response factor 1
4ldw_A1e-1671635917357Auxin response factor 1
4ldw_B1e-1671635917357Auxin response factor 1
4ldx_A1e-1671635917357Auxin response factor 1
4ldx_B1e-1671635917357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727980.0AK372798.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3013C04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197968.10.0auxin response factor 4-like
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLA0A3B6FZ540.0A0A3B6FZ54_WHEAT; Auxin response factor
STRINGEMT171680.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]