PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF111600160CFD_t1

Common Name

TRAES_3BF111600160CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 390aa MW: 41868.5 Da PI: 6.6316

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF111600160CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.4	7.3e-14	306	364	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +r rr++kNRe+A rsR+RK+a++ eLe + L++eN +Lk e +++ + +++ e+ TRAES3BF111600160CFD_t1 306 RRHRRMIKNRESAARSRARKQAYTVELEAELNHLKEENARLKAEEKTILLTKKQMLVEN 364 689***************************************99887766666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-13	301	366	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.852	304	349	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.38E-11	306	352	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.2E-14	306	353	No hit	No description
CDD	cd14707	2.79E-24	306	360	No hit	No description
Pfam	PF00170	5.2E-11	306	362	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	309	324	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MASEMSKDVK FSKEEVTSHP HILEAEEQTV AAARQSSIFA LKLDELQYSV CEAGRNFGSM 60 NMDEFMSNIW NAEEFQAATG GGLVGMEVAP VVGAGGGEGG VYAGGSNLAR QESFSLPPPL 120 CRKTVEEVWA EINREPRPVH AQPQAARPSQ QPPVQPSVAA NDRQGTLGEM MLEQFLVKAG 180 VVRGSGAGGQ APVPVGIVHG QINPAQQGQQ PGPMMYPMAP ANGMFPVMGD GMGFIPNGYA 240 GMVVVPPPPP PQGGVGIVSP GSSDGRSAMT QADMMNCMGD GARMESGGTR KRGAPEDQSC 300 ERSIERRHRR MIKNRESAAR SRARKQAYTV ELEAELNHLK EENARLKAEE KTILLTKKQM 360 LVENMIEQSK ENVNAKKGGT LSRHCGSCIW

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MASEMSKDVK FSKEEVTSHP HILEAEEQTV AAARQSSIFA LKLDELQYSV CEAGRNFGSM  60
NMDEFMSNIW NAEEFQAATG GGLVGMEVAP VVGAGGGEGG VYAGGSNLAR QESFSLPPPL  120
CRKTVEEVWA EINREPRPVH AQPQAARPSQ QPPVQPSVAA NDRQGTLGEM MLEQFLVKAG  180
VVRGSGAGGQ APVPVGIVHG QINPAQQGQQ PGPMMYPMAP ANGMFPVMGD GMGFIPNGYA  240
GMVVVPPPPP PQGGVGIVSP GSSDGRSAMT QADMMNCMGD GARMESGGTR KRGAPEDQSC  300
ERSIERRHRR MIKNRESAAR SRARKQAYTV ELEAELNHLK EENARLKAEE KTILLTKKQM  360
LVENMIEQSK ENVNAKKGGT LSRHCGSCIW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that possesses transactivation activity in yeast (PubMed:17604002, PubMed:21055780, PubMed:18236009). Involved in abscisic acid (ABA) signaling pathway. Binds to the G-box motif 5'-CACGTG-3' of TRAB1 gene promoter (PubMed:17604002). Involved in the regulation of pollen maturation. May act as negative regulator of salt stress response (PubMed:18236009). Together with PYL5, PP2C30 and SAPK2, is part of an ABA signaling unit that modulates seed germination and early seedling growth (PubMed:22071266). {ECO:0000269\|PubMed:17604002, ECO:0000269\|PubMed:18236009, ECO:0000269\|PubMed:21055780, ECO:0000269\|PubMed:22071266}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) (PubMed:21055780, PubMed:18236009, PubMed:22071266). Induced by salt stress. Down-regulated by cold and drought stresses (PubMed:18236009). {ECO:0000269\|PubMed:18236009, ECO:0000269\|PubMed:21055780, ECO:0000269\|PubMed:22071266}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182640.1	0.0	protein ABSCISIC ACID-INSENSITIVE 5-like
Swissprot	Q8RZ35	1e-156	ABI5_ORYSJ; bZIP transcription factor ABI5 homolog
TrEMBL	A0A077RQJ7	0.0	A0A077RQJ7_WHEAT; Uncharacterized protein
TrEMBL	A0A446Q5W8	0.0	A0A446Q5W8_TRITD; Uncharacterized protein
STRING	Traes_3B_179A63BB2.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3830	35	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-34	ABA-responsive element binding protein 3

Publications ? help Back to Top
Zou M,Guan Y,Ren H,Zhang F,Chen F A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance. Plant Mol. Biol., 2008. 66(6): p. 675-83 [PMID:18236009] Kim H, et al. A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth. J. Exp. Bot., 2012. 63(2): p. 1013-24 [PMID:22071266] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Bhatnagar N, et al. The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10. Plant Mol. Biol., 2017. 93(4-5): p. 389-401 [PMID:28000033]