PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF110700050CFD_t1 | ||||||||
Common Name | TRAES_3BF110700050CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 297aa MW: 32110.8 Da PI: 9.6363 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.3 | 9.6e-15 | 152 | 196 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky TRAES3BF110700050CFD_t1 152 PWTEDEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 196 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.265 | 31 | 84 | IPR017884 | SANT domain |
SMART | SM00717 | 0.05 | 32 | 82 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.16E-6 | 34 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.17E-4 | 35 | 79 | No hit | No description |
PROSITE profile | PS51294 | 18.929 | 145 | 201 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.47E-17 | 146 | 201 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-17 | 148 | 199 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-12 | 149 | 199 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 149 | 195 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-12 | 152 | 196 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.93E-11 | 152 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MMMREPWMEV LPPAAMGYYG GPRGAGGWFT GQPRAWTADE NKQFERALAG LDLRSPDWDK 60 VAHATGKTVR EVVDHFKSLE LDVRQIESGT FPGYGPGAAG AGAAAAFTLQ WDGSGGHAGA 120 GDFRHGYRFG GCGGGRRHGG RTPEQERKKG VPWTEDEHKL FLLGLKKYGK GDWRNISRNF 180 VQTRTPTQVA SHAQKYFIRL SSGGGKDKRR SSIHDITTVH LDDQPPSPSQ SSMITQSSAP 240 APSSATGQFS LPADTKQHGG ANAPYNSPPS YGMGLQDQGI QCGPLHDQLA ANRSMLY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362184 | 0.0 | AK362184.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003C15. | |||
GenBank | AK363192 | 0.0 | AK363192.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013G01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200804.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Refseq | XP_020200805.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-69 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A077RPV7 | 0.0 | A0A077RPV7_WHEAT; Uncharacterized protein | ||||
STRING | BRADI2G02810.1 | 1e-140 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7886 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 5e-36 | MYB family protein |
Publications ? help Back to Top | |||
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