PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF108700110CFD_t1 | ||||||||
Common Name | TRAES_3BF108700110CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 399aa MW: 43025.2 Da PI: 8.1238 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.7 | 1.1e-53 | 31 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkat TRAES3BF108700110CFD_t1 31 LPPGFRFHPTDEELVVHYLKKKAAKVPLPV-TIITEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKAT 115 79****************************.89***************988899******************************** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk++l++ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl TRAES3BF108700110CFD_t1 116 GTDKPILASgcGREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 159 ********9999999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-64 | 28 | 196 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.583 | 31 | 196 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-27 | 32 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MRSMGSSDSS SGSAPPRHQP PPPQQGSAPE LPPGFRFHPT DEELVVHYLK KKAAKVPLPV 60 TIITEVDLYK FDPWELPEKA TFGEQEWYFF SPRDRKYPNG ARPNRAATSG YWKATGTDKP 120 ILASGCGREK VGVKKALVFY RGKPPKGLKT NWIMHEYRLT DASSSATTSR PPPVTGGSRS 180 ASLRLDDWVL CRIYKKINKA AAGDQQRSME CEDSVEDAVT AYPLYATAGM TGAGAHGSNY 240 DSLLHHQDSH EDNFLDGLLT AEDAGLSAGP TSLSHLAAAA RASPAPTKQF LAPSSSTPFN 300 WLDASTVGIL PQARNFPGFN RSRNVGNMSL SSTADMAVDN GGGNAINTMP PFMNHLPMQD 360 GTYHQQHVIL GAPLAPEATA AATSAFQHPV QISGVNWNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-72 | 31 | 200 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-72 | 31 | 200 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-72 | 31 | 200 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-72 | 31 | 200 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-72 | 31 | 200 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-72 | 31 | 200 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-72 | 31 | 200 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-72 | 31 | 200 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-72 | 31 | 200 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-72 | 31 | 200 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-72 | 31 | 200 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-72 | 31 | 200 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-72 | 31 | 200 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-72 | 31 | 200 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM820888 | 0.0 | KM820888.1 Triticum aestivum cultivar Chinese Spring NAC transcription factor NAM-B2 (NAM-B2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200235.1 | 0.0 | NAC transcription factor NAM-B2 | ||||
Swissprot | A0SPJ6 | 0.0 | NAMB2_TRITD; NAC transcription factor NAM-B2 | ||||
TrEMBL | A0A446M4G0 | 0.0 | A0A446M4G0_TRITD; Uncharacterized protein | ||||
TrEMBL | W5BKB9 | 0.0 | W5BKB9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BS_58AA829F4.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7572 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 9e-93 | NAC domain containing protein 25 |
Publications ? help Back to Top | |||
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