PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF108400020CFD_t1
Common NameTRAES_3BF090100150CFD_c1, TRAES_3BF108400020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 804aa    MW: 88863.7 Da    PI: 5.8738
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF108400020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.33.2e-1144307992374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              ++lL++cA+ vs +d + a+ lL++++++as +gd  qRla++f+++L+arla+++s++yk  + s+ +    ++ l+a++l+  +
  TRAES3BF108400020CFD_t1 430 ETLLIHCAQSVSIDDRRSATDLLKQIRQHASANGDGDQRLAHCFANGLEARLAGNGSQIYKLHTISRFA---CADILKAYQLYLAA 512
                              789**********************************************************99999999...9************* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                              +P+ k+sh  aNq+I++ave++++vHi+Df++ +G+QWp+L+q L++Rp+gpp+lRiT+++ p++g   +e++ee+g+ L+++A++
  TRAES3BF108400020CFD_t1 513 CPFKKISHYFANQTIMNAVEKAKKVHIVDFGVYYGFQWPCLIQRLSKRPGGPPELRITAIDTPQPGfrPAERIEEIGRYLSDYAQT 598
                              ************************************************************************************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              ++vpf+++  +a+++e++++e+L+++++E l+Vn++++ ++l+desv  es+r+ vL+++++++P+v+++   + ++n++ F+ rf
  TRAES3BF108400020CFD_t1 599 FKVPFKYHG-IASQFEAVRVEDLHIEKDEILIVNSMFRFKTLMDESVVAESPRNMVLNTIRKMKPHVFIHGVTNGSYNAPFFVSRF 683
                              *********.7*************************************************************************** PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                               eal  +sa fd+lea++pr++eer  +E  +++re+ nv++ceg er er et+++W+ r ++a Fk++pl+++++k a+  ++ 
  TRAES3BF108400020CFD_t1 684 REALFQFSAHFDMLEANIPRDNEERLLIESTIFSREAINVISCEGMERMERPETYKQWQVRNQRARFKQLPLDQEIMKRAREKVKC 769
                              *************************************************************************************9 PP

                     GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              ++++ + ++e++g+l++gWk+r L+++S W+
  TRAES3BF108400020CFD_t1 770 YHKN-FIIDEDNGWLLQGWKGRILYALSTWK 799
                              9966.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.789403780IPR005202Transcription factor GRAS
PfamPF035141.1E-111430799IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MVMDAALHDW CGPLPGGSKL PIYPQIPDGF TAEELESLLL FPPDGADAGA YLNAAAAPPL  60
LPSPPASADS ASSPPPRDAL VSSPAAAAAA GQAQPDDSEV FSDIVLGYIN RMLMAEDIDE  120
KFDHYPAHQA LLAAEKPFLE ILADQPPCSG GSTVESPDGS SVTTNSFNSL ATCNCAAPSG  180
GLRAMQAPPA LEFPTAEFLQ PPQFYQDLSP ESCVVEAGGA WPYDAMEFNP LPDALLSQSS  240
SFASSNGSSV AFSEGFEPWL STAGAVPDAG LSDFVLQSQQ AAQFSRGFEE GSRFLPQESK  300
LVIDVDSLPS VWVKEDKKVV EVKREKADAE VAIHRGKKHF YGDDLDADEV RCCKHSAPVV  360
DADHLVREMM DKVLLCNGET CSRGVKELRE ALQHDVAAHS GGAHGKGSGH GKGRGKKQVK  420
QPKKEVVDLE TLLIHCAQSV SIDDRRSATD LLKQIRQHAS ANGDGDQRLA HCFANGLEAR  480
LAGNGSQIYK LHTISRFACA DILKAYQLYL AACPFKKISH YFANQTIMNA VEKAKKVHIV  540
DFGVYYGFQW PCLIQRLSKR PGGPPELRIT AIDTPQPGFR PAERIEEIGR YLSDYAQTFK  600
VPFKYHGIAS QFEAVRVEDL HIEKDEILIV NSMFRFKTLM DESVVAESPR NMVLNTIRKM  660
KPHVFIHGVT NGSYNAPFFV SRFREALFQF SAHFDMLEAN IPRDNEERLL IESTIFSREA  720
INVISCEGME RMERPETYKQ WQVRNQRARF KQLPLDQEIM KRAREKVKCY HKNFIIDEDN  780
GWLLQGWKGR ILYALSTWKA NPQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-464337998375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188125.10.0scarecrow-like protein 9
TrEMBLA0A077RW700.0A0A077RW70_WHEAT; Uncharacterized protein
STRINGMLOC_69561.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125183137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-164GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]