PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF107700050CFD_t1
Common NameTRAES_3BF107700050CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 620aa    MW: 66646.2 Da    PI: 8.1688
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF107700050CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.6e-103794161954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  TRAES3BF107700050CFD_t1 379 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 416
                              554459******************************88 PP
2BELL94.59.4e-31244313372
                     BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              +e q kk++L+s++eeV+krY+qy++q+q+vi+sFe vag  +a+p+t+lAl+ ++rhFrc+k +i +q+
  TRAES3BF107700050CFD_t1 244 AEQQWKKTRLISMMEEVCKRYRQYYQQVQAVIASFESVAGFSNAAPFTALALRVMARHFRCIKGMILSQL 313
                              5899**************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.8E-38177311IPR006563POX domain
PfamPF075269.0E-38182309IPR006563POX domain
PROSITE profilePS5007112.26357420IPR001356Homeobox domain
SMARTSM003893.8E-10360424IPR001356Homeobox domain
CDDcd000867.20E-13360421No hitNo description
SuperFamilySSF466895.13E-17362429IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-28363424IPR009057Homeodomain-like
PfamPF059206.6E-19377416IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MSSPAGGYGG AEAHHQQQHH GHMLLHNHAH HMAAAAAAAA ASGGQLYHVP QHSRREKLRF  60
PPDAAAEDPP LTPLAQHHHH QQQHQAGAWP PPAFYSYASS SSSYSPHSPT VPQGQQLVLN  120
GLTAQQVTAQ QFPQIPTQNF SLSLSSASSN PATTPPAPRK QEPGAAAPAA GPYGPFTGYA  180
TVLGRSRFLG PAQKLLEEIC DVGGAAAHVD TSVPDEGLLD ADPMDGADDA AGHELDTSGP  240
MSGAEQQWKK TRLISMMEEV CKRYRQYYQQ VQAVIASFES VAGFSNAAPF TALALRVMAR  300
HFRCIKGMIL SQLRNTSKMP VKEGMSKDIT IFGLGGGGAP VGGFQRGGSV NGFGQPHNIW  360
RPQRGLPERS VTVLRAWLFE HFLHPYPTDG DKQMLAKQTG LTRNQVSNWF INARVRLWKP  420
MVEEIHNLEM RQVHKHSPHD KGQLGVHGQT HQHSSQQQQQ RSGKRSEPCD SHPGQSSGVT  480
RNHHHHHNAA AAASSHGGGF PDDLSQMSHS MQQGQVTFAG YGALPSPQQH GSMSSPQHHH  540
QHHVVGGGAG HAGGGGGVSL TLGLHQNNRV CFGEPLPANL AHRFGLEDVV SDPYVMGSFG  600
GQDRHFAKEI GGHLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-16366423158Homeobox protein Meis1
4xrs_B5e-16366423158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5466470.0AB546647.1 Triticum aestivum WBLH4 mRNA for BEL1-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175344.10.0BEL1-like homeodomain protein 9
TrEMBLA0A077RWA80.0A0A077RWA8_WHEAT; Uncharacterized protein
TrEMBLA0A446Q5900.0A0A446Q590_TRITD; Uncharacterized protein
STRINGMLOC_66099.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.13e-58TALE family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]