PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF106700020CFD_t1 | ||||||||
Common Name | TRAES_3BF106700020CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 467aa MW: 49791.1 Da PI: 7.7671 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.6 | 2.7e-10 | 52 | 78 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG C yG++C+++H++ TRAES3BF106700020CFD_t1 52 PGEANCVYYLRTGACGYGETCRYNHPR 78 57899********************96 PP | |||||||
2 | zf-CCCH | 38.3 | 2.3e-12 | 100 | 126 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++++GtCk+G++Ck++H++ TRAES3BF106700020CFD_t1 100 PGQPPCEYYMKNGTCKFGSNCKYNHPR 126 5899*********************96 PP | |||||||
3 | zf-CCCH | 34.8 | 2.7e-11 | 147 | 171 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRAES3BF106700020CFD_t1 147 EKECSYYIKTGHCKFGSTCKFHHPE 171 689********************96 PP | |||||||
4 | zf-CCCH | 38.4 | 2.1e-12 | 301 | 327 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ TRAES3BF106700020CFD_t1 301 PGQPECHHYMKTGTCKFGSTCKYNHPQ 327 5789*********************97 PP | |||||||
5 | zf-CCCH | 25.3 | 2.6e-08 | 350 | 372 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G+Ck+G+ CkF H+ TRAES3BF106700020CFD_t1 350 QPCLYYSQHGFCKFGPGCKFDHP 372 69********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.9E-5 | 51 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.291 | 51 | 79 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-7 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 55 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 57 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-7 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.093 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-10 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-5 | 104 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-4 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.014 | 144 | 172 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-8 | 147 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-4 | 150 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 300 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.197 | 300 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-10 | 302 | 327 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-6 | 303 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 346 | 374 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.9E-5 | 346 | 373 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-6 | 348 | 376 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 350 | 371 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.7E-6 | 350 | 372 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MMESYAASPK DGGGGGAEGG RADAATGLEE SMWRLGLAGG EEAAGEGLPE RPGEANCVYY 60 LRTGACGYGE TCRYNHPRDR AAAFDGGTRT ARTVEYPERP GQPPCEYYMK NGTCKFGSNC 120 KYNHPREGGS VQPVVLNSCG YPLRLGEKEC SYYIKTGHCK FGSTCKFHHP EGPEHGVVSE 180 TPNMYPPVQQ LPVSSPLPYP PLASWQLGRP SVLPGSFFPG SYPPMMHPSA VMPMQGWNPY 240 MPPINQVASA GGQQTVQAGS LYGLSHQGPP SAVAYGSNYA SLSSSTWPSI DKQEVVFPER 300 PGQPECHHYM KTGTCKFGST CKYNHPQYLS TPRSNYMLSP LGLPIRPGAQ PCLYYSQHGF 360 CKFGPGCKFD HPLGALSYSP SASSLGDVPI APYPLSLPVA PMAPSPSSSG LRPDYILAKD 420 SSANQPASPG TTFGNAGQLS KIYAPHMLLR PPTSATGATV TIHGGEF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355379 | 0.0 | AK355379.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1019O17. | |||
GenBank | AK361294 | 0.0 | AK361294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1137A21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190679.1 | 0.0 | zinc finger CCCH domain-containing protein 5-like | ||||
Swissprot | Q5NAV3 | 0.0 | C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | A0A446PN12 | 0.0 | A0A446PN12_TRITD; Uncharacterized protein | ||||
TrEMBL | W5CU52 | 0.0 | W5CU52_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_45F1B4533.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2761 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-111 | C3H family protein |
Publications ? help Back to Top | |||
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