PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF106700020CFD_t1
Common NameTRAES_3BF106700020CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 467aa    MW: 49791.1 Da    PI: 7.7671
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF106700020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.7e-105278127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                             +++++C +++rtG C yG++C+++H++
  TRAES3BF106700020CFD_t1 52 PGEANCVYYLRTGACGYGETCRYNHPR 78
                             57899********************96 PP

2zf-CCCH38.32.3e-12100126127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C +++++GtCk+G++Ck++H++
  TRAES3BF106700020CFD_t1 100 PGQPPCEYYMKNGTCKFGSNCKYNHPR 126
                              5899*********************96 PP

3zf-CCCH34.82.7e-11147171327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +++C+++ +tG+Ck+G++CkF+H++
  TRAES3BF106700020CFD_t1 147 EKECSYYIKTGHCKFGSTCKFHHPE 171
                              689********************96 PP

4zf-CCCH38.42.1e-12301327127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+++++tGtCk+G++Ck++H++
  TRAES3BF106700020CFD_t1 301 PGQPECHHYMKTGTCKFGSTCKYNHPQ 327
                              5789*********************97 PP

5zf-CCCH25.32.6e-08350372426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                               +C ++++ G+Ck+G+ CkF H+
  TRAES3BF106700020CFD_t1 350 QPCLYYSQHGFCKFGPGCKFDHP 372
                              69********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.9E-55178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2915179IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-75378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-65580IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-45778IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-799126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.09399127IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6102127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5104127IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-4144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014144172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6145172IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-8147171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4150171IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5300327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197300328IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-10302327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6303327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389346374IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-5346373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6348376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4350371IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-6350372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MMESYAASPK DGGGGGAEGG RADAATGLEE SMWRLGLAGG EEAAGEGLPE RPGEANCVYY  60
LRTGACGYGE TCRYNHPRDR AAAFDGGTRT ARTVEYPERP GQPPCEYYMK NGTCKFGSNC  120
KYNHPREGGS VQPVVLNSCG YPLRLGEKEC SYYIKTGHCK FGSTCKFHHP EGPEHGVVSE  180
TPNMYPPVQQ LPVSSPLPYP PLASWQLGRP SVLPGSFFPG SYPPMMHPSA VMPMQGWNPY  240
MPPINQVASA GGQQTVQAGS LYGLSHQGPP SAVAYGSNYA SLSSSTWPSI DKQEVVFPER  300
PGQPECHHYM KTGTCKFGST CKYNHPQYLS TPRSNYMLSP LGLPIRPGAQ PCLYYSQHGF  360
CKFGPGCKFD HPLGALSYSP SASSLGDVPI APYPLSLPVA PMAPSPSSSG LRPDYILAKD  420
SSANQPASPG TTFGNAGQLS KIYAPHMLLR PPTSATGATV TIHGGEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3553790.0AK355379.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1019O17.
GenBankAK3612940.0AK361294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1137A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190679.10.0zinc finger CCCH domain-containing protein 5-like
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A446PN120.0A0A446PN12_TRITD; Uncharacterized protein
TrEMBLW5CU520.0W5CU52_WHEAT; Uncharacterized protein
STRINGTraes_3B_45F1B4533.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-111C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]