PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF100600040CFD_t1
Common NameTRAES_3BF100600040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 308aa    MW: 33464.5 Da    PI: 6.5084
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF100600040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-51121401128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrF+Ptd+e++v+yLk+kv++    ++++i++vdiyk++Pw+Lp k++ +e ew+fFs+rd+ky++g r+nr++ sgyWkat
  TRAES3BF100600040CFD_t1  12 LPPGFRFQPTDQEIIVCYLKRKVASAASAVTSIIADVDIYKFDPWELPDKAQFGEGEWFFFSPRDRKYPNGARPNRTAGSGYWKAT 97 
                              79*************************999999***************99999999****************************** PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+dk++l++ + +  g+kk Lvfy+gr+p+g+kt+Wvmheyrl
  TRAES3BF100600040CFD_t1  98 GTDKPILAAgGARCLGVKKALVFYQGRSPRGTKTEWVMHEYRL 140
                              ********9555669**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-606170IPR003441NAC domain
PROSITE profilePS5100560.10712170IPR003441NAC domain
PfamPF023652.3E-2613140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEEGFVFRGC ELPPGFRFQP TDQEIIVCYL KRKVASAASA VTSIIADVDI YKFDPWELPD  60
KAQFGEGEWF FFSPRDRKYP NGARPNRTAG SGYWKATGTD KPILAAGGAR CLGVKKALVF  120
YQGRSPRGTK TEWVMHEYRL LHADAGAATR HKPHDSMRLD DWVLCRVRKK GVAVAPDMDG  180
NPGAPSHAEV QAIDSTTAAA HGAFGDDWTD GQLLQYLMSG GSGQVDGAGA ISVAAGHVHD  240
GARRESAPEV HLASVLENIK RDLSFHAMDD VYFLQPSKRA NCMGGGAGHH TDGDQLSPPT  300
SLSMFEDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-661217017165NO APICAL MERISTEM PROTEIN
1ut4_B2e-661217017165NO APICAL MERISTEM PROTEIN
1ut7_A2e-661217017165NO APICAL MERISTEM PROTEIN
1ut7_B2e-661217017165NO APICAL MERISTEM PROTEIN
4dul_A2e-661217017165NAC domain-containing protein 19
4dul_B2e-661217017165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200711.10.0NAC transcription factor 32-like
SwissprotD2SMN43e-75NAMB1_HORVS; NAC transcription factor NAM-B1
TrEMBLA0A077RZD50.0A0A077RZD5_WHEAT; Uncharacterized protein
STRINGEMT299650.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137971929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-68NAC domain containing protein 25
Publications ? help Back to Top
  1. Jamar C, et al.
    NAM-1gene polymorphism and grain protein content in Hordeum.
    J. Plant Physiol., 2010. 167(6): p. 497-501
    [PMID:20005003]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]