PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF100100070CFD_t1 | ||||||||
Common Name | TRAES_3BF100100070CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 270aa MW: 28769.1 Da PI: 6.3497 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd+ l d+ +++G+ +W t +++ g++R++k+c++rw++yl TRAES3BF100100070CFD_t1 14 RGPWSPEEDDALRDYMQRHGNTgSWITLPSKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.1 | 2.3e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd +++ + qlG++ W++Ia+ + +Rt++++k++w++ TRAES3BF100100070CFD_t1 69 GGFTEEEDTIIYSLYSQLGSK-WSLIASQLE-RRTDNDVKNHWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.488 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-9 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.19E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.338 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.03E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MGRAPCCDRA AVKRGPWSPE EDDALRDYMQ RHGNTGSWIT LPSKAGLKRC GKSCRLRWLN 60 YLRPDIRHGG FTEEEDTIIY SLYSQLGSKW SLIASQLERR TDNDVKNHWN TKLKKRLAAA 120 AAAFSTAPCR RSPSFMPLPA PAPAHAHLSP LLPLPVPTVK AEAYTYDDFL APTAGLQDPF 180 AAEGSSSASA ALQDTFAAEG SSSASAALQD TLAAEGSTSA SAASSGSNWS AVDNAGGFFV 240 DFCAAGPDLA AADQFLGGFY YPLDSTLSLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951908 | 0.0 | JF951908.1 Triticum aestivum clone TaMYB25 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171470.1 | 1e-136 | transcription factor RAX2-like | ||||
TrEMBL | A0A077RQD4 | 0.0 | A0A077RQD4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PGY3 | 0.0 | A0A446PGY3_TRITD; Uncharacterized protein | ||||
STRING | MLOC_67874.1 | 1e-133 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 6e-65 | MYB family protein |
Publications ? help Back to Top | |||
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