PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF099900090CFD_t1
Common NameTRAES_3BF099900090CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 542aa    MW: 58716.8 Da    PI: 6.7322
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF099900090CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.94.3e-21127244185
                 trihelix   1 rWtkqevlaLiearremeerlrrgk................................lkkplWeevskkmrergferspkqCkekw 54 
                              +Wt+ +v++Li+++ + +++ +  +                                +kk++W++vs++m+e gf +sp+qC++k+
  TRAES3BF099900090CFD_t1 127 KWTDAMVRLLIAVVYNAGDDGEGVSaggkaaashshgkagasaaaahgghgpqaaaqQKKGKWKSVSRAMMENGFAVSPQQCEDKF 212
                              79999***9999999555555533223345556666667777777788888888888***************************** PP

                 trihelix  55 enlnkrykkikegekkr.tsessstcpyfdql 85 
                              ++lnkryk++ +  +++ +++++++  ++d +
  TRAES3BF099900090CFD_t1 213 NDLNKRYKRVVDLLGRGtACKVVENPTLLDAM 244
                              *****************559999999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-17125270No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MERVDGGAGL GARGSAAAML GMEMHLVHQP QPQIHAASSF QQPPEHLHHA NGGGGGGFQV  60
QHHQAMPVRQ QHPQPPYAAY VAPPSRAVKA HEEEEMGNGV GNGGGVVQQP RAGAGAGTAG  120
CPWSRMKWTD AMVRLLIAVV YNAGDDGEGV SAGGKAAASH SHGKAGASAA AAHGGHGPQA  180
AAQQKKGKWK SVSRAMMENG FAVSPQQCED KFNDLNKRYK RVVDLLGRGT ACKVVENPTL  240
LDAMGELTAK AKEEARKLLS SKHLFFREMC TYHNPPGAAA ATSHGTDDGA ACFHHPQPAA  300
VPGAANSSAG RQVVAMVNSS TRSEDDSEDD VLSSKEAEEE EEDDDYDLDD VEEKAPGTNR  360
RGGRVDDSNV FHNYGGHKNK RRRGESSAAA AGEDGEEDGN KHARRRSCTM QELQRELAAA  420
EAGGDQQQLR QWMQRRALEL EKQQLAYEVR EYALEKQRHK WEQFKATKEW DMEHERLRME  480
RRRVDGQRML LVLKQKEFDL DLAEAYNNYS SSVDHHPGAQ TPPPAGFQQQ PGSSPSTTGH  540
PN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171378.10.0uncharacterized protein LOC109756958
TrEMBLA0A077RQG50.0A0A077RQG5_WHEAT; Uncharacterized protein
STRINGMLOC_52900.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-46sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]