PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRAES3BF099200070CFD_t1 | ||||||||
Common Name | TRAES_3BF099200070CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 382aa MW: 42293.5 Da PI: 8.4676 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.4 | 4e-09 | 64 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s ykGV++++ +gr++A+++d + + +r g + t+eeAa+ ++ a++k +g TRAES3BF099200070CFD_t1 64 SIYKGVTRHSISGRYEAHLWDrHCRSTaQGRRGKQGCYKTEEEAARTHDLAALKCWG 120 57*******************7766335445555599***************99876 PP | |||||||
2 | AP2 | 49.8 | 8.7e-16 | 164 | 215 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++ +grW+A+I + +++ +lg f+t eeAa+a++ a+ +++g TRAES3BF099200070CFD_t1 164 SKYRGVTRHHANGRWEARIGHaA----GTQYSYLGIFDTQEEAARAYDLAAIRIRG 215 89****************99933....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.2E-6 | 64 | 120 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.19E-15 | 64 | 131 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-10 | 64 | 130 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-9 | 65 | 129 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-15 | 65 | 135 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.343 | 65 | 129 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.07E-21 | 164 | 225 | No hit | No description |
Pfam | PF00847 | 3.1E-11 | 164 | 215 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-17 | 164 | 224 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-18 | 165 | 223 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-25 | 165 | 229 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.846 | 165 | 223 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 382 aa Download sequence Send to blast |
MVTMTTTKKQ PCRGAAPLSP ASSSSASSWP WGSRIAPSSA RTLGRKKKKR GRSDAVVVPS 60 RRSSIYKGVT RHSISGRYEA HLWDRHCRST AQGRRGKQGC YKTEEEAART HDLAALKCWG 120 SDCGLLNFPV DTYRQERERM QRMTREEYLA RLRRNSSGFT RGVSKYRGVT RHHANGRWEA 180 RIGHAAGTQY SYLGIFDTQE EAARAYDLAA IRIRGPGAVT NFDADCYVDI PQPLPCKAEP 240 DMEPAAARPC PLPPAPLPLL PPKVEPKDEP EDDFEFEREP PPAPALRDDA DRVDRAIAEV 300 LQALCVDRAD FEARYPPRRA RVAAPGAGWP TPLDSDELPD LPVPGDVGFF EDDIESVLFA 360 APGDAEVPRA ATISSLSSGR WW |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 44 | 49 | RKKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195177.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | A0A077S102 | 0.0 | A0A077S102_WHEAT; Uncharacterized protein | ||||
STRING | BRADI2G53070.1 | 1e-118 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13401 | 27 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-56 | AP2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|