PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF098200010CFD_t1
Common NameTRAES_3BF098200010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 351aa    MW: 38210.3 Da    PI: 10.1446
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF098200010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.82.1e-1156104155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s++kGV   + +grW ++I++      r +r++lg+f   + Aa+a++ a+++++g
  TRAES3BF098200010CFD_t1  56 SRFKGVVPQP-NGRWGSQIYE------RhARVWLGTFPDQDLAARAYDVAALRYRG 104
                              689***9788.8********9......44*************************98 PP
2B3932.1e-29170268189
                              EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                              f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +g
  TRAES3BF098200010CFD_t1 170 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtperTTTTGNGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLAAG 255
                              89*************************99887766444458999****************************************** PP

                              -EEEEEE-SS.SE CS
                       B3  78 DfvvFkldgr.se 89 
                              D+++F+ +   +e
  TRAES3BF098200010CFD_t1 256 DSIIFSCSAYgQE 268
                              *****96654334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.07E-2256112No hitNo description
PfamPF008471.7E-656104IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1556113IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-1957112IPR001471AP2/ERF domain
PROSITE profilePS5103220.52157112IPR001471AP2/ERF domain
SMARTSM003801.5E-2257118IPR001471AP2/ERF domain
PRINTSPR003672.2E-65869IPR001471AP2/ERF domain
PRINTSPR003672.2E-694114IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.5E-38165286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-29167274IPR015300DNA-binding pseudobarrel domain
CDDcd100179.98E-28168260No hitNo description
SMARTSM010192.8E-21170278IPR003340B3 DNA binding domain
PfamPF023624.2E-27170273IPR003340B3 DNA binding domain
PROSITE profilePS5086313.394170279IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGVEILSSMV EDSSQYSSGA STATTESGTT GRALTALSLP VAIADESVTS AQSAPSRFKG  60
VVPQPNGRWG SQIYERHARV WLGTFPDQDL AARAYDVAAL RYRGRDAATN FPCAAAEAEL  120
AFLGAHSKAE IVDMLRKHTY ADELRQGLRR GRGMGARAQP TPSWAREPLF EKAVTPSDVG  180
KLNRLVVPKQ HAEKHFPLKR TPERTTTTGN GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT  240
KGWSRFVREK GLAAGDSIIF SCSAYGQEKQ LFIDCKKNTT VNSGKSASPL PVVETAKGEQ  300
VRVVRLFGVD IAGVKRGRAA TAEQGPPELL KRQCVPLPHG QRSPALGAFV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-4716727611115DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191173.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020200371.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020201146.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
SwissprotQ9AWS01e-139Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A077RPT10.0A0A077RPT1_WHEAT; Uncharacterized protein
STRINGTraes_3B_DF7E92499.20.0(Triticum aestivum)
STRINGTraes_3B_DF7E924991.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-96related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]