PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF096900070CFD_t1

Common Name

TRAES_3BF096900070CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 284aa MW: 31392.9 Da PI: 6.8279

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF096900070CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	31.6	4.9e-10	3	37	96	128
NAM 96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l TRAES3BF096900070CFD_t1 3 NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 37 67899*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	17.832	1	56	IPR003441	NAC domain
SuperFamily	SSF101941	4.18E-13	2	56	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MANGRQKGCK KILVLYTNFG KHRKPEKTNW VMHQYHLGDL EEEKEGELVV CKIFYQTQPR 60 QCSWSASSDR GGAGGAVAIA ASAAVTVQEQ RMRDSGSGSS SSRDHEALSA TSYPAGYAMA 120 AAVEMQHLKH SGDHFSFAPF RKSFEEVGIG GDQVPSDQLG RSEHQQHAGQ EQQPHRPELA 180 TTAVPATAFL VSRPTNPISA TVPPPLQHTS VVLDHDQFHV PAIFLHHEKF QQHQQKIDRR 240 SAGLEELVMG CTSTCTKGEA SIPHSQETEW PYPYWPPDNQ DHHG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190511.1	1e-179	uncharacterized protein LOC109776267 isoform X1
Swissprot	Q9M0F8	1e-56	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A077RQD0	0.0	A0A077RQD0_WHEAT; Uncharacterized protein
TrEMBL	A0A446PFS0	0.0	A0A446PFS0_TRITD; Uncharacterized protein
STRING	MLOC_75795.1	1e-178	(Hordeum vulgare)
STRING	Traes_3AS_74E386CE7.1	1e-180	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	7e-26	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]