PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF096700070CFD_t1 | ||||||||
Common Name | TRAES_3BF096700070CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-other | ||||||||
Protein Properties | Length: 189aa MW: 21888.4 Da PI: 6.5119 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36.8 | 6.4e-12 | 75 | 109 | 22 | 56 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + yp+ae ++L+++l+++ rqVk+WFqN+R k TRAES3BF096700070CFD_t1 75 CLYPDAELWKDLSERLDMSARQVKFWFQNKRSSSK 109 67*****************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0016 | 66 | 115 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-8 | 74 | 113 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.7E-9 | 74 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.4E-9 | 75 | 109 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.965 | 77 | 111 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.57E-6 | 77 | 109 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MDGELLEYDS DVQNMLDPFT TSQHLLQHEH GDEMHGLLGA TTNMGNTDDA NTAAADKGKN 60 NDGETHTHSD QRMECLYPDA ELWKDLSERL DMSARQVKFW FQNKRSSSKG KRQLQDTKNL 120 QRENQMLKDE NQAIKWVVEN KTCLKCAGVM LKTQNTSEHQ RLSRENMWLK EKLRHATAYL 180 KEGLYRNGM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-134 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182727.1 | 2e-86 | homeobox-leucine zipper protein ROC2-like | ||||
TrEMBL | A0A077RX84 | 1e-139 | A0A077RX84_WHEAT; Uncharacterized protein | ||||
STRING | TRIUR3_29318-P1 | 3e-66 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16772 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 3e-17 | homeodomain GLABROUS 1 |
Publications ? help Back to Top | |||
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