PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF096700040CFD_t1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 113aa    MW: 12855.5 Da    PI: 8.6578
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF096700040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.34.1e-0644663052
                             HHHHHHHCTS-HHHHHHHHHHHH CS
                 Homeobox 30 reeLAkklgLterqVkvWFqNrR 52
                             r++  ++lg++  qVk+WFqN+ 
  TRAES3BF096700040CFD_t1 44 RKHHGERLGMSALQVKFWFQNKH 66
                             6666789**************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-44266IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MNEYNHLFQY NHVDEMCGLV GATNNVCNPD DAHAVAADQD AKLRKHHGER LGMSALQVKF  60
WFQNKHTSNM GRMQLRETKN LQGENQKLKD ENKAIKRVVQ NKTCLKCAGD ATN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-67HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182727.17e-32homeobox-leucine zipper protein ROC2-like
TrEMBLA0A446PHI84e-36A0A446PHI8_TRITD; Uncharacterized protein
STRINGTRIUR3_29318-P12e-31(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16772512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.22e-13HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]