PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF096700030CFD_t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-other | ||||||||
Protein Properties | Length: 152aa MW: 17429.2 Da PI: 5.8768 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3.1e-19 | 82 | 132 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ eq+++Le++F+k++yp+ae r++L+++l+++ qVk+WFqN+R k TRAES3BF096700030CFD_t1 82 RLRGEQIQQLEAVFQKSPYPDAELRKDLSERLHMSALQVKFWFQNKRSSSK 132 56679******************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-17 | 55 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.516 | 74 | 134 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-16 | 75 | 135 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.9E-15 | 76 | 138 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.8E-17 | 82 | 132 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.48E-14 | 86 | 132 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 109 | 132 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MDGELPEYDS DVQNMLDHFI TSEQGHLPPH EHGDEMHDLL GATTNMGNTD DANAAAADKG 60 NNNDEETNHV QRMVTRRANY NRLRGEQIQQ LEAVFQKSPY PDAELRKDLS ERLHMSALQV 120 KFWFQNKRSS SKGKRQLQDT KNLLGREPDA KR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-154 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192134.1 | 4e-67 | homeobox-leucine zipper protein ROC7-like | ||||
TrEMBL | A0A3B6FHN8 | 1e-103 | A0A3B6FHN8_WHEAT; Uncharacterized protein | ||||
STRING | EMT09593 | 1e-50 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16772 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17710.1 | 9e-14 | homeodomain GLABROUS 4 |
Publications ? help Back to Top | |||
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