PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF093800020CFD_t1 | ||||||||
Common Name | TRAES_3BF093800020CFD_c1, TRAES_3BF108200050CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 503aa MW: 54814.8 Da PI: 8.3816 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.2 | 1.8e-10 | 125 | 150 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f++rt tCky ++CkF H++ TRAES3BF093800020CFD_t1 125 GEKECAFYMRTRTCKYEETCKFDHPQ 150 7899********************97 PP | |||||||
2 | zf-CCCH | 36.8 | 6.3e-12 | 174 | 200 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff +tG Ck+G++CkF+H++ TRAES3BF093800020CFD_t1 174 PGEPNCPFFVKTGDCKFGSKCKFNHSK 200 5789*********************95 PP | |||||||
3 | zf-CCCH | 25.5 | 2.3e-08 | 248 | 268 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+++a+ G Ck G +CkF+H TRAES3BF093800020CFD_t1 248 KPCPHYAK-GKCKLGTNCKFIH 268 59******.************* PP | |||||||
4 | zf-CCCH | 26.1 | 1.5e-08 | 322 | 347 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+ +tG C yG +C+F+H+ TRAES3BF093800020CFD_t1 322 PGEVDCSFYIKTGSCMYGRTCRFNHP 347 57899********************8 PP | |||||||
5 | zf-CCCH | 34.6 | 3.2e-11 | 392 | 416 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +tG+Ck+ +rCkF+H+ TRAES3BF093800020CFD_t1 392 GETVCDFYKKTGFCKFSERCKFHHP 416 6789********************9 PP | |||||||
6 | zf-CCCH | 38.8 | 1.6e-12 | 449 | 472 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF H+p TRAES3BF093800020CFD_t1 449 EACAYYMKTGACKFGVQCKFDHPP 472 78********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.127 | 123 | 151 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.02 | 123 | 150 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-5 | 124 | 150 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-8 | 125 | 150 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.84 | 173 | 201 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 173 | 200 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-9 | 175 | 200 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 178 | 201 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 179 | 200 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.859 | 245 | 271 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-4 | 245 | 270 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-5 | 246 | 271 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-6 | 248 | 268 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 248 | 270 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.549 | 321 | 349 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 321 | 348 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-5 | 323 | 347 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 325 | 348 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 389 | 418 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.136 | 390 | 418 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-6 | 390 | 417 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.5E-9 | 392 | 416 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 395 | 416 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.601 | 445 | 473 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-6 | 445 | 472 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 448 | 471 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-10 | 449 | 472 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 449 | 470 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MSGYPFYPYG RGGVGEDASA MSGYPFYPYG RGGVGDDAAA RYSSYEIDLI AARYAGDPSP 60 YPYPSASGGF DPHVGARRPA DVLYHQSIMG SHSTIGQSYA FYSPNTMVKR PRLESSLPIY 120 PQRPGEKECA FYMRTRTCKY EETCKFDHPQ WVPEGGIPNW KEGTKAGESY PERPGEPNCP 180 FFVKTGDCKF GSKCKFNHSK KKDDGTVAGP GDKESLFSGN STLPVKPSEP CPESLISGNS 240 TLPVKPSKPC PHYAKGKCKL GTNCKFIHAK DMEAPSSGGN ESENTATAEA AGHHGAAHDS 300 VSAKKSAPVA LEHNSKGMPI RPGEVDCSFY IKTGSCMYGR TCRFNHPGRH IQASVVPGEM 360 LNPAAKFLPS FDFRVTHVPI EPEPITYPQR PGETVCDFYK KTGFCKFSER CKFHHPVDRS 420 APDSIAKWEP SQQPVTLTVA GFPRREDAEA CAYYMKTGAC KFGVQCKFDH PPLGEAIAKV 480 SKHGEGKEGG KKKAVGLSYV LEN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251631 | 0.0 | AK251631.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129b04, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200959.1 | 0.0 | zinc finger CCCH domain-containing protein 8 isoform X2 | ||||
Swissprot | Q5ZDJ6 | 0.0 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | A0A077RSL8 | 0.0 | A0A077RSL8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_1B1E1E2B1.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-122 | floral homeotic protein (HUA1) |
Publications ? help Back to Top | |||
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