PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF093800020CFD_t1
Common NameTRAES_3BF093800020CFD_c1, TRAES_3BF108200050CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 503aa    MW: 54814.8 Da    PI: 8.3816
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF093800020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.8e-10125150227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++C f++rt tCky ++CkF H++
  TRAES3BF093800020CFD_t1 125 GEKECAFYMRTRTCKYEETCKFDHPQ 150
                              7899********************97 PP

2zf-CCCH36.86.3e-12174200127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+ff +tG Ck+G++CkF+H++
  TRAES3BF093800020CFD_t1 174 PGEPNCPFFVKTGDCKFGSKCKFNHSK 200
                              5789*********************95 PP

3zf-CCCH25.52.3e-08248268425
                              ---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                              ++C+++a+ G Ck G +CkF+H
  TRAES3BF093800020CFD_t1 248 KPCPHYAK-GKCKLGTNCKFIH 268
                              59******.************* PP

4zf-CCCH26.11.5e-08322347126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ++++ C+f+ +tG C yG +C+F+H+
  TRAES3BF093800020CFD_t1 322 PGEVDCSFYIKTGSCMYGRTCRFNHP 347
                              57899********************8 PP

5zf-CCCH34.63.2e-11392416226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++  C+f+ +tG+Ck+ +rCkF+H+
  TRAES3BF093800020CFD_t1 392 GETVCDFYKKTGFCKFSERCKFHHP 416
                              6789********************9 PP

6zf-CCCH38.81.6e-12449472427
                              ---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                              e C ++++tG Ck+G +CkF H+p
  TRAES3BF093800020CFD_t1 449 EACAYYMKTGACKFGVQCKFDHPP 472
                              78********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.127123151IPR000571Zinc finger, CCCH-type
SMARTSM003560.02123150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5124150IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8125150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84173201IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5173200IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9175200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5178201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4179200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859245271IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-4245270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5246271IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-6248268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5248270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549321349IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021321348IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-5323347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5325348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6389418IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136390418IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6390417IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-9392416IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5395416IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601445473IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6445472IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5448471IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10449472IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4449470IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MSGYPFYPYG RGGVGEDASA MSGYPFYPYG RGGVGDDAAA RYSSYEIDLI AARYAGDPSP  60
YPYPSASGGF DPHVGARRPA DVLYHQSIMG SHSTIGQSYA FYSPNTMVKR PRLESSLPIY  120
PQRPGEKECA FYMRTRTCKY EETCKFDHPQ WVPEGGIPNW KEGTKAGESY PERPGEPNCP  180
FFVKTGDCKF GSKCKFNHSK KKDDGTVAGP GDKESLFSGN STLPVKPSEP CPESLISGNS  240
TLPVKPSKPC PHYAKGKCKL GTNCKFIHAK DMEAPSSGGN ESENTATAEA AGHHGAAHDS  300
VSAKKSAPVA LEHNSKGMPI RPGEVDCSFY IKTGSCMYGR TCRFNHPGRH IQASVVPGEM  360
LNPAAKFLPS FDFRVTHVPI EPEPITYPQR PGETVCDFYK KTGFCKFSER CKFHHPVDRS  420
APDSIAKWEP SQQPVTLTVA GFPRREDAEA CAYYMKTGAC KFGVQCKFDH PPLGEAIAKV  480
SKHGEGKEGG KKKAVGLSYV LEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516310.0AK251631.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129b04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200959.10.0zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A077RSL80.0A0A077RSL8_WHEAT; Uncharacterized protein
STRINGTraes_3B_1B1E1E2B1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-122floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]