PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRAES3BF091700010CFD_t1 | ||||||||
Common Name | TRAES_3BF091700010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 224aa MW: 23473.1 Da PI: 7.1315 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.6 | 2.2e-20 | 102 | 136 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ TRAES3BF091700010CFD_t1 102 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 136 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.4E-20 | 96 | 153 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.391 | 96 | 132 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.47E-14 | 97 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-17 | 100 | 136 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.80E-13 | 101 | 133 | No hit | No description |
Pfam | PF00320 | 4.9E-18 | 102 | 136 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 102 | 127 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MLHEAAPCTC GLLYGSCGGG CSMLFAAAPG DHHYYSKQCG DDGSYASYGG SVDCTLSLGT 60 PSTRRAEAGL PWEAVPSCNG RQDIGPARAD QSNAGAASAR RCANCDTTST PLWRNGPRGP 120 KSLCNACGIR YKKEERRAAA AAVAPTALAS DSGIEYAYGY ARQQQQQQQQ WGCYGPAVAK 180 AASYGMFGDA ATEDGPCLPW GLGVMPSSPA FGSVREMTSL FQYY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00110 | ampDAP | Transfer from AT2G18380 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184096.1 | 1e-137 | GATA transcription factor 20-like | ||||
Swissprot | Q9ZPX0 | 9e-28 | GAT20_ARATH; GATA transcription factor 20 | ||||
TrEMBL | A0A077RTQ7 | 1e-162 | A0A077RTQ7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PUC6 | 1e-162 | A0A446PUC6_TRITD; Uncharacterized protein | ||||
STRING | MLOC_5372.1 | 1e-139 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18380.1 | 5e-27 | GATA transcription factor 20 |
Publications ? help Back to Top | |||
---|---|---|---|
|