PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF091600190CFD_t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 247aa MW: 26022.5 Da PI: 7.233 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 56.8 | 4.6e-18 | 121 | 182 | 108 | 170 |
GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 g+ ++H++Dfdi++G QW++L+q+La+R +++ +l++T ++s++s++ el+ ++e+L++fA+ TRAES3BF091600190CFD_t1 121 GAGCIHVLDFDIGMGEQWASLMQELAQR-RPATTLKVTSLVSSASHHPLELQLIHENLSSFAA 182 6789***********************9.7889*****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.492 | 1 | 247 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-15 | 121 | 182 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MAGVMDPPAL ELDHAMSMMS PAAASLEPSL SPFAPAMEDA EGAPFGHAHS FLLHQQQHHP 60 QPHATFFGAH PSFERAGAEA ACFPGPPPAA GTPLLRFAFY FKEALRLALS PNGETPDGLL 120 GAGCIHVLDF DIGMGEQWAS LMQELAQRRP ATTLKVTSLV SSASHHPLEL QLIHENLSSF 180 AAAGAGGGRG HAGLSWTSHR SSRTRPAGGC DVARRQRRFL GLVAAVGTSN RSRTLVSFLT 240 PIATPNG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983724.1 | 4e-46 | scarecrow-like protein 6 isoform X2 | ||||
TrEMBL | A0A446QAJ2 | 1e-141 | A0A446QAJ2_TRITD; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 4e-11 | GRAS family protein |
Publications ? help Back to Top | |||
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