PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF091200100CFD_t1

Common Name

TRAES_3BF091200100CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WOX

Protein Properties

Length: 197aa MW: 22254.8 Da PI: 8.1179

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF091200100CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.2e-21	61	121	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F++ n +ps++++++++++l +++e+++++WFqNrRa+ k+ TRAES3BF091200100CFD_t1 61 RQRWTPTQMQLQILESIFNQgNGTPSKQKIKDITAELsqhgQISETNIYNWFQNRRARSKR 121 89***************99************************************97 PP
2	Wus_type_Homeobox	101.7	5.1e-33	60	123	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G+i+++N+++WFQNr+aR+++kq TRAES3BF091200100CFD_t1 60 ARQRWTPTQMQLQILESIFNQGNGTPSKQKIKDITAELSQHGQISETNIYNWFQNRRARSKRKQ 123 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-17	55	126	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.722	57	122	IPR001356	Homeobox domain
SMART	SM00389	7.9E-14	59	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.4E-18	60	127	IPR009057	Homeodomain-like
Pfam	PF00046	5.2E-19	61	121	IPR001356	Homeobox domain
CDD	cd00086	1.94E-13	61	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MTDEQMEVLR KQISIYATIC EQLVEMHRAL TAHQDSIAGM SLGNLYCDPL MVHGGQKITA 60 RQRWTPTQMQ LQILESIFNQ GNGTPSKQKI KDITAELSQH GQISETNIYN WFQNRRARSK 120 RKQAASSLPN NAESEAEGDE ESPTDKKPRS DGSQQQNMAV RAHNLKRISE MHRHFDAAER 180 GHVCGPTMYG SSNDTSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188039.1	1e-130	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	5e-98	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A077RTA5	1e-147	A0A077RTA5_WHEAT; Uncharacterized protein
STRING	MLOC_56124.2	1e-132	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-57	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]