PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF090100150CFD_t1 | ||||||||
Common Name | TRAES_3BF090100150CFD_c1, TRAES_3BF108400020CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 804aa MW: 88863.7 Da PI: 5.8738 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 373.3 | 3.2e-114 | 430 | 799 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ++lL++cA+ vs +d + a+ lL++++++as +gd qRla++f+++L+arla+++s++yk + s+ + ++ l+a++l+ + TRAES3BF090100150CFD_t1 430 ETLLIHCAQSVSIDDRRSATDLLKQIRQHASANGDGDQRLAHCFANGLEARLAGNGSQIYKLHTISRFA---CADILKAYQLYLAA 512 789**********************************************************99999999...9************* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171 +P+ k+sh aNq+I++ave++++vHi+Df++ +G+QWp+L+q L++Rp+gpp+lRiT+++ p++g +e++ee+g+ L+++A++ TRAES3BF090100150CFD_t1 513 CPFKKISHYFANQTIMNAVEKAKKVHIVDFGVYYGFQWPCLIQRLSKRPGGPPELRITAIDTPQPGfrPAERIEEIGRYLSDYAQT 598 ************************************************************************************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257 ++vpf+++ +a+++e++++e+L+++++E l+Vn++++ ++l+desv es+r+ vL+++++++P+v+++ + ++n++ F+ rf TRAES3BF090100150CFD_t1 599 FKVPFKYHG-IASQFEAVRVEDLHIEKDEILIVNSMFRFKTLMDESVVAESPRNMVLNTIRKMKPHVFIHGVTNGSYNAPFFVSRF 683 *********.7*************************************************************************** PP GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 eal +sa fd+lea++pr++eer +E +++re+ nv++ceg er er et+++W+ r ++a Fk++pl+++++k a+ ++ TRAES3BF090100150CFD_t1 684 REALFQFSAHFDMLEANIPRDNEERLLIESTIFSREAINVISCEGMERMERPETYKQWQVRNQRARFKQLPLDQEIMKRAREKVKC 769 *************************************************************************************9 PP GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++ + ++e++g+l++gWk+r L+++S W+ TRAES3BF090100150CFD_t1 770 YHKN-FIIDEDNGWLLQGWKGRILYALSTWK 799 9966.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.789 | 403 | 780 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-111 | 430 | 799 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 804 aa Download sequence Send to blast |
MVMDAALHDW CGPLPGGSKL PIYPQIPDGF TAEELESLLL FPPDGADAGA YLNAAAAPPL 60 LPSPPASADS ASSPPPRDAL VSSPAAAAAA GQAQPDDSEV FSDIVLGYIN RMLMAEDIDE 120 KFDHYPAHQA LLAAEKPFLE ILADQPPCSG GSTVESPDGS SVTTNSFNSL ATCNCAAPSG 180 GLRAMQAPPA LEFPTAEFLQ PPQFYQDLSP ESCVVEAGGA WPYDAMEFNP LPDALLSQSS 240 SFASSNGSSV AFSEGFEPWL STAGAVPDAG LSDFVLQSQQ AAQFSRGFEE GSRFLPQESK 300 LVIDVDSLPS VWVKEDKKVV EVKREKADAE VAIHRGKKHF YGDDLDADEV RCCKHSAPVV 360 DADHLVREMM DKVLLCNGET CSRGVKELRE ALQHDVAAHS GGAHGKGSGH GKGRGKKQVK 420 QPKKEVVDLE TLLIHCAQSV SIDDRRSATD LLKQIRQHAS ANGDGDQRLA HCFANGLEAR 480 LAGNGSQIYK LHTISRFACA DILKAYQLYL AACPFKKISH YFANQTIMNA VEKAKKVHIV 540 DFGVYYGFQW PCLIQRLSKR PGGPPELRIT AIDTPQPGFR PAERIEEIGR YLSDYAQTFK 600 VPFKYHGIAS QFEAVRVEDL HIEKDEILIV NSMFRFKTLM DESVVAESPR NMVLNTIRKM 660 KPHVFIHGVT NGSYNAPFFV SRFREALFQF SAHFDMLEAN IPRDNEERLL IESTIFSREA 720 INVISCEGME RMERPETYKQ WQVRNQRARF KQLPLDQEIM KRAREKVKCY HKNFIIDEDN 780 GWLLQGWKGR ILYALSTWKA NPQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-46 | 433 | 799 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188125.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A077RW70 | 0.0 | A0A077RW70_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_69561.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12518 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-164 | GRAS family protein |
Publications ? help Back to Top | |||
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