PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF080800010CFD_t1 | ||||||||
Common Name | TRAES_3BF080800010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 384aa MW: 42471 Da PI: 9.2562 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 107 | 153 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+ +v++ G+++W+ I+++++ gR +kqc++rw ++l TRAES3BF080800010CFD_t1 107 KGAWTQEEDKLLKILVARDGNRRWEEISKHLP-GRIGKQCRERWTNHL 153 79******************************.************996 PP | |||||||
2 | Myb_DNA-binding | 48 | 2.9e-15 | 162 | 202 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eEd +l++ +k lG+ W++Iar++ gR+++++k++w+ TRAES3BF080800010CFD_t1 162 PWTEEEDRKLIEEHKTLGNS-WSKIARRLF-GRSENSIKNHWY 202 8*****************99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.752 | 102 | 157 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-13 | 106 | 155 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 106 | 160 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.99E-28 | 107 | 201 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.5E-16 | 107 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.11E-14 | 109 | 153 | No hit | No description |
PROSITE profile | PS51294 | 17.946 | 158 | 209 | IPR017930 | Myb domain |
SMART | SM00717 | 9.4E-15 | 159 | 207 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-17 | 162 | 202 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-13 | 162 | 202 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.23E-14 | 162 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MASPMDMLFN QEPAAAMTNE AEGRVEGYFP SSSHGFRHFQ QVGTTPIGVP DMGSPISGFR 60 MSPFTFDMPE GPLPVAGYGT GVVPVEIPAV WQKKHSLKNS RAMAPSKGAW TQEEDKLLKI 120 LVARDGNRRW EEISKHLPGR IGKQCRERWT NHLRSDLKNE APWTEEEDRK LIEEHKTLGN 180 SWSKIARRLF GRSENSIKNH WYATKRGLTS KRRFRKRRFS LLEEYIRSTI MGDKSTASPL 240 QSSAPPLGLG SGGQVVPSAS TMLAFSSLPG MGTYLHPGNA PGSSSQGATM NLSSLLPKLN 300 TYGGEMHQRY DSSPSFPPNN MLHYGPPPTF QQMFSQCLQG QDACSNMNLF PLLKSLDLGG 360 NYYCSETGRT SIGGIDDPDD INVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-34 | 107 | 206 | 4 | 102 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-34 | 107 | 206 | 4 | 102 | C-Myb DNA-Binding Domain |
1msf_C | 4e-34 | 107 | 206 | 4 | 102 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153228.1 | 0.0 | myb-like protein Q | ||||
TrEMBL | A0A077RXJ2 | 0.0 | A0A077RXJ2_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_14401.1 | 1e-129 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 5e-39 | myb domain protein 98 |
Publications ? help Back to Top | |||
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