PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF079700090CFD_t1
Common NameTRAES_3BF079700090CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 643aa    MW: 71280.4 Da    PI: 5.1254
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF079700090CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.2e-09525572347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              +WT  E ++lvd+v+q+G+g W+ I r        Rt  ++k++w+++
  TRAES3BF079700090CFD_t1 525 AWTLSEVLKLVDGVAQFGPGKWSEIRRLSFasySYRTSVDLKDKWRNL 572
                              7**************************99999*99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.855518577IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-12519576IPR009057Homeodomain-like
SuperFamilySSF466891.88E-14520579IPR009057Homeodomain-like
SMARTSM007179.3E-9522575IPR001005SANT/Myb domain
CDDcd116601.21E-17524574No hitNo description
PfamPF002496.8E-6525572IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MEVDTLQDAQ ETKNGGNDFK ENGSLDPVVY QLVRVEGDGT LVPPTEDEVL QIEQFLDDKV  60
DLPSIDDVGN VEDFFTNDCM LLKEPDFEEG YSELETNGEI HTQQFDADLE VDRLKPSVDS  120
LDIPSKCTVD HDHKPDKLNT EQGDNNIVHQ DNASTETPKS TVLNDSCSAE KEKTDACSRS  180
VNNSSTGPSI SGVTSSVPDF SILRGEVCLD NLTIRELQEA FRATFGRETT VKDKLWLKRR  240
ITMGLTNSCD VQSSGCVVKD YKIVCKDAKH ELPTIEGIPK AEVEATSLVR YQVLGPGNER  300
DTPSCSYYRS EDQQRSSNRL KGVSTDNDES EGTLQDEQGA AKRLRKPTKR YIEELSDTET  360
LDSTGKLSSP GKRAAHGEVL LRQRVTPLQE VDSLSITYPT RKDTFGGFSV HVPYASRMRR  420
GRPRRNFISF LDDDPPVECP EVQMAVETMS GKDGEHVNHV NSAVEVPLMK NTEKKGGHIE  480
TAEKKGGHIE TADNKEIHSI EADDICRSDA KTKTKRGLKR KHHRAWTLSE VLKLVDGVAQ  540
FGPGKWSEIR RLSFASYSYR TSVDLKDKWR NLIRASQTQL SPENDGVCPR KSNPSIIPVP  600
PAILLRVKEL AELQPQAGNL AAAIKFSGQS SKVAQGRGSS GFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519310.0JF951931.1 Triticum aestivum clone TaMYB48 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570524.10.0uncharacterized protein LOC100846611 isoform X2
TrEMBLW5CX780.0W5CX78_WHEAT; Uncharacterized protein
STRINGTraes_3B_6F783E776.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.18e-88TRF-like 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]