PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF076600020CFD_t1 | ||||||||
Common Name | TRAES_3BF076600020CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 447aa MW: 48076.7 Da PI: 6.4584 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.1 | 2.8e-12 | 247 | 291 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ L+++lP+ K +K +iL A eY++sL TRAES3BF076600020CFD_t1 247 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILITAREYVNSL 291 8899********************95.....4999************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.922 | 242 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-15 | 243 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.13E-12 | 244 | 295 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.9E-16 | 246 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.5E-10 | 247 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-11 | 248 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MDSSSWIHGY GANDGAAAGN SGFMCGYAAS CVVPEGLQSS TEEQRTQIQH HLNQASIQHV 60 QISMQMNMED EPAAYIVAAG DGAAVGMQQS VLDEFDFLPS HHAGGCSFPS SSSTSSSFRS 120 ASLSCSPENS SAHALTMPAA GLQFPEVSSH VPPLVLPCDD DYHQYVLNFH DTAAMEPGVV 180 PASAFSRYAR HLGARRRPKP ACGQKMFKKS MSVLVKMQTA MRYSHQQHHF QQASAETELS 240 SVNQLQHMIS ERKRREKLND SFQALKTVLP PGSKKDKTSI LITAREYVNS LKSKVCDLEE 300 KNKALQAQLA ECARAAGRVE EDDAEKVEIQ ITRGAADRED GTTTSEVCTV KIAARPAHGN 360 TMDVVLRTLQ CLNDQMGEGD VSLVAMSTSD GDGGNGLTGA FLTMQLKSAS GAKWEEEVVR 420 EAVAKAVAAR TGADRRGDAA GRSRHAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 250 | 255 | ERKRRE |
2 | 251 | 256 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367926 | 0.0 | AK367926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065A01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164742.1 | 0.0 | putative transcription factor bHLH041 isoform X1 | ||||
TrEMBL | A0A077RF56 | 0.0 | A0A077RF56_WHEAT; Uncharacterized protein | ||||
STRING | EMT03037 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2900 | 31 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 4e-25 | bHLH family protein |
Publications ? help Back to Top | |||
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