PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF075800010CFD_t1
Common NameTRAES_3BF075800010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 380aa    MW: 39480.8 Da    PI: 8.2136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF075800010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.41.9e-06273313954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  TRAES3BF075800010CFD_t1 273 ARLRRERVSDRLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 313
                              599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.411264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-13270323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-12270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-10270318No hitNo description
Gene3DG3DSA:4.10.280.108.8E-10273321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MVTFGWSGPG LHDDAYLPRP VNQLSCGRFD LDDAFLRQLQ CDFGGGGQVS SSYGAAVGGA  60
AANNGALGFF GSEVDVFSSV VDGASAHYGL LDSALAFSRV LPCGGEGDPG AVSNGAMFSG  120
YSGTTVCNIS SGESNNYSSG GGGHDVTEVA SPTSTISPTT TSHPTITSSA QQALHANRKL  180
PADDCAAPLP HAGTKRKAPT TTATSITFGQ DTNAGAAGEY KPDMEAMAQV KEMIYRAAAM  240
RPVNLVTEPT AAGSIKPRRK NVRISSDPQT VAARLRRERV SDRLRVLQKL VPGGSKMDTA  300
SMLDEAASYL KFLKSQVQAL ETLGTTSSTG ASAAAVASTG RLHSQQHYYS NNPGFLGFAR  360
NNNNISSVFR NPNGNSARLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255260KPRRKN
2273278RLRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148710.10.0uncharacterized protein LOC109733912
RefseqXP_020190692.10.0uncharacterized protein LOC109776460
SwissprotA0A0P0WQ905e-46LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLA0A077S2L30.0A0A077S2L3_WHEAT; Uncharacterized protein
TrEMBLA0A446PW060.0A0A446PW06_TRITD; Uncharacterized protein
STRINGTRIUR3_19402-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.18e-34bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]