PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF075700010CFD_t1 | ||||||||
Common Name | TRAES_3BF075700010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 417aa MW: 44801.2 Da PI: 6.6237 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.5e-12 | 217 | 261 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ L+++lP+ K +K +iL A eY++sL TRAES3BF075700010CFD_t1 217 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILITAREYVNSL 261 8899********************95.....4999************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.922 | 212 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-15 | 213 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.62E-13 | 214 | 265 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.1E-16 | 216 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-10 | 217 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-11 | 218 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MDSSSWIHGY GANDGAAAGN SGFMCGYAAR YISMQMNMED EPAAYIVAAG DGAAVGMQQS 60 VLDEFDFLPS HHAGGCSFPS SSSTSSSFRS ASLSCSPENS SAHALTMPAA GLQFPEVSSH 120 VPPLVLPCDD DYHQYVLNFH DTAAMEPGVV PASAFSRYAR HLGARRRPKP ACGQKMFKKS 180 MSVLVKMQTA MRYSHQQHHF QQASAETELS SVNQLQHMIS ERKRREKLND SFQALKTVLP 240 PGSKKDKTSI LITAREYVNS LKSKVCDLEE KNKALQAQLA ECARAAGRVE EDDAEKVEIQ 300 ITRGAADRED GTTTSEVCTV KIAARPAHGN TMDVVLRTLQ CLNDQMGEGD VSLVAMSTSD 360 GDGGNGLTGA FLTMQLKSAS GAKWEEEVVR EAVAKAVAAR TGADRRGDAA GRSRHAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 220 | 225 | ERKRRE |
2 | 221 | 226 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367926 | 0.0 | AK367926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065A01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164742.1 | 0.0 | putative transcription factor bHLH041 isoform X1 | ||||
TrEMBL | A0A077RV46 | 0.0 | A0A077RV46_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PI37 | 0.0 | A0A446PI37_TRITD; Uncharacterized protein | ||||
STRING | EMT03037 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2900 | 31 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 4e-25 | bHLH family protein |
Publications ? help Back to Top | |||
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