PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF075200070CFD_t1
Common NameTRAES_3BF075200070CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 674aa    MW: 73671.9 Da    PI: 8.2919
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF075200070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.43.7e-164296256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             r+ ++++++q+++Le +F  + +p++++r  +++++gLt +qVk+WFqN+R+ +k
  TRAES3BF075200070CFD_t1 42 RRLQRLNPQQTQVLEGFFGICAHPDENQRMGMSESTGLTMQQVKFWFQNKRTHMK 96
                             6667899*********************************************998 PP
2START102.19.4e-331954091203
                              HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                    START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla 77 
                              ela++a+ e+v + +++ p+W+ ++    + +n++ + q+f  + +     + +ea ra g+v m++ + v  ++d+  +++  ++
  TRAES3BF075200070CFD_t1 195 ELAQSAMHEFVVLSESGGPLWMPVPggslDVLNKMAYAQTFGAGSSanaigFMTEATRADGMVMMDAKQIVDYIMDSE-CYTSFCP 279
                              57899************************************77666999*******************9999999999.******9 PP

                              .......EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS
                    START  78 .......kaetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152
                                       ++++  +s+   ga +lm+ e++++splvp R+ +fvR++r ++ g+ +ivdvS+d+ +         ++++ pSgi
  TRAES3BF075200070CFD_t1 280 glvtsanTTKVYKWPTSAgynGAMHLMTVETVFPSPLVPsRKCTFVRCCRDMQNGTVIIVDVSLDNGDGT------FKCHKMPSGI 359
                              9999555555555555658***********************************************9995......68******** PP

                              EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
                    START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203
                              li+++    s+vt+vehv +++  +h+l+r+ + sgl++ga++wv+   rq
  TRAES3BF075200070CFD_t1 360 LIRSLNSDASQVTVVEHVQVNDTGVHELYRPSL-SGLMFGARRWVSSIVRQ 409
                              *******************************98.699********876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-172592IPR009057Homeodomain-like
SuperFamilySSF466891.21E-152697IPR009057Homeodomain-like
PROSITE profilePS5007114.4953898IPR001356Homeobox domain
SMARTSM003894.7E-1340102IPR001356Homeobox domain
CDDcd000865.79E-144197No hitNo description
PfamPF000469.5E-144296IPR001356Homeobox domain
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
PROSITE profilePS5084821.124186415IPR002913START domain
SuperFamilySSF559611.15E-17191409No hitNo description
CDDcd088751.23E-74193411No hitNo description
PfamPF018523.1E-25195406IPR002913START domain
SMARTSM002341.0E-12195412IPR002913START domain
Gene3DG3DSA:3.30.530.204.3E-4252379IPR023393START-like domain
SuperFamilySSF559616.73E-9453627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MTGNRGGRRR KAGRRARDND LDISQSNSDG QDGAEGSQQP KRRLQRLNPQ QTQVLEGFFG  60
ICAHPDENQR MGMSESTGLT MQQVKFWFQN KRTHMKHVTG KEETYRMKAQ NEMLREENKR  120
LASAAKTAFC PACVALPGLN PSVEVQRLRQ ENESLKQQLS QLRAEAHPSS SRPFQLDPST  180
ENIIGRENDM DAIAELAQSA MHEFVVLSES GGPLWMPVPG GSLDVLNKMA YAQTFGAGSS  240
ANAIGFMTEA TRADGMVMMD AKQIVDYIMD SECYTSFCPG LVTSANTTKV YKWPTSAGYN  300
GAMHLMTVET VFPSPLVPSR KCTFVRCCRD MQNGTVIIVD VSLDNGDGTF KCHKMPSGIL  360
IRSLNSDASQ VTVVEHVQVN DTGVHELYRP SLSGLMFGAR RWVSSIVRQS ARMRDLFIVS  420
KSASNGNTNG RKTLMKIADG LLADYASGVA AVPGSGWTIL HGAGTEDDIR ITYRKNNDDS  480
NNAVVSVCAS FHLPVPLKVT FDLLKNNLLR PKWDVLVNGN SVREEVAVCK GVGAGIDDVV  540
SILHLKNRDN IMILQNSGYD VSGAFMVYCP VNIQVMNEIM SPSNTAESNN VSLYPTGFHL  600
LPVEDTALGL GEGGATLVTA GFQIMLKLAR GTGLYPRSAS TAAGLMTENI ATIKKTLTSS  660
HPIFYRRQPP NNLI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF3320360.0JF332036.1 Triticum turgidum subsp. durum HD-Zip IV transcription factor GL9H2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164122.10.0homeobox-leucine zipper protein TF1-like
SwissprotQ5ZAY00.0TF1_ORYSJ; Homeobox-leucine zipper protein TF1
TrEMBLA0A077S0S20.0A0A077S0S2_WHEAT; Uncharacterized protein
STRINGTRIUR3_16941-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104752833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-110protodermal factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]