PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF073700090CFD_t1
Common NameTRAES_3BF073700090CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 841aa    MW: 91388.8 Da    PI: 6.33
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF073700090CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.5e-191674357
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  TRAES3BF073700090CFD_t1 16 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECavlaNVDPKQIKVWFQNRRCREKQ 74
                             6789*****************************************************97 PP
2START173.11.8e-541613682204
                              HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECT CS
                    START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetleviss 87 
                              +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++e+++v+  
  TRAES3BF073700090CFD_t1 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMEVVNVLPA 245
                              789*******************************************************.8888888888***************** PP

                              T..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
                    START  88 g..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167
                              g  g+++l +++l+a+++l+p Rdf+  Ry+  l +g++v++++S++s+q  p+    +++vR+e+lpSg+li+p+++g+s +++v
  TRAES3BF073700090CFD_t1 246 GsnGTIELLYMQLYAPTTLAPaRDFWLMRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFVRGEMLPSGFLIRPSDGGGSVIHIV 331
                              *****************************************************999999*************************** PP

                              E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                    START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                              +h dl+ +++++++r+l++s+++ ++k+ +a+l++++
  TRAES3BF073700090CFD_t1 332 DHLDLEPWSVPEVVRPLYESSAMVAQKMSMAALRYLR 368
                              *********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5321175IPR001356Homeobox domain
SMARTSM003893.3E-151379IPR001356Homeobox domain
PfamPF000462.3E-161674IPR001356Homeobox domain
CDDcd000863.76E-161676No hitNo description
SuperFamilySSF466891.28E-161777IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-181874IPR009057Homeodomain-like
CDDcd146862.02E-568107No hitNo description
PROSITE profilePS5084825.927151370IPR002913START domain
CDDcd088752.51E-72155369No hitNo description
Gene3DG3DSA:3.30.530.202.3E-22158365IPR023393START-like domain
SMARTSM002342.6E-44160370IPR002913START domain
SuperFamilySSF559612.2E-36160371No hitNo description
PfamPF018523.1E-52161368IPR002913START domain
PfamPF086705.8E-44692840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MVTAREAAAA AMDASKYVRY TPEQVEALER LYYECPKPSS LRRQQLVREC AVLANVDPKQ  60
IKVWFQNRRC REKQRKESGR LQSLNRKLTA MNKLLMEEND RLQKQVSHLV YQNGYYRQQT  120
HSAGLATTDT SCESVVTSGQ QNVVVVPPPP RDASPAGLMS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIIAISH GCAGVAARAC GLVGMEPAKV AEILKDRPLW LRDCRSMEVV  240
NVLPAGSNGT IELLYMQLYA PTTLAPARDF WLMRYTSILD DGSLVVCERS LSSKQGGPSM  300
PLVQPFVRGE MLPSGFLIRP SDGGGSVIHI VDHLDLEPWS VPEVVRPLYE SSAMVAQKMS  360
MAALRYLRQV AHEDTHSVIT GWGRQPAALR ALSQKLTRGF NETLGGLADD GWSVIESDGV  420
DDVCISVNSS PSKVMSCTAT FSDGLPMVST GVLCAKASML LQDVSPPSLL RFLREHRSRW  480
ADSSLDAFFA SALKPNFCNL PMSRLGGFSG QVILPLAHTF DPEEFLEVIK IGNASNYQDT  540
LMHRDLFLLQ MYNGIEENTM GTCSELIFAP IDASFGDDSP LLPSGFRIIP IDSPLDTSSP  600
NCTLDLASTL EVGTPGSRIT GHSRSGSKAV MTIAFQFAFE SHLQDSVAAM ARQYMRSIIS  660
SVQRIALALS SSHLVPHGSS HLVPPVTPEA ATLSRWIVQS YRFHFGAELI KAADAGSGES  720
ALKALWQHTS AILCCSLKAM PVLTFANQSG LDMLETTLAA LREITMDKVL DYDQGRKSLL  780
CADLMASVAE QGYACVEGGT CASSMGRPAS YGKAVAWKVL DDGGAGAAHC VCFAFMDWSF  840
V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3653120.0AK365312.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033F15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183693.10.0homeobox-leucine zipper protein HOX29-like isoform X2
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLW5D2V60.0W5D2V6_WHEAT; Uncharacterized protein
STRINGTraes_3B_BE203E9B7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]