PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF071100030CFD_t1
Common NameTRAES_3BF071100030CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 496aa    MW: 52813.2 Da    PI: 10.6501
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF071100030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS69.66e-22275393226359
                     GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                               vL+++++lsPk +v+veq a hn              y+alf +l++ l r +   + vE++ +g ei nvv ceg +r+er+e+
  TRAES3BF071100030CFD_t1 275 FVLQTIRELSPKAFVIVEQGAGHN--------------YAALFYALDMALLRYDVRHARVEQFHFGAEIHNVVGCEGVARVERNER 346
                              49********************96..............899999999999999999999*************************** PP

                     GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359
                              + +Wr+r+++aGF ++p++   a++a+  l++ + + gy+v ee+g lv
  TRAES3BF071100030CFD_t1 347 ADQWRRRMSRAGFLSMPFKM--AAKAREWLEENAgGSGYTVAEEKGRLV 393
                              ****************9975..5567788887777**********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.6471389IPR005202Transcription factor GRAS
PfamPF035142.1E-19275393IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MTPPQQCADR RPPPLGLRGL SRVAFQPRSP PPGGLPPLGL TGRSGAPSFS IGTAGFERLP  60
PPTTLPRRHV GLTRPSRAPA PNEAGSSNWS ASVGEAGTGS GGFVGFHLIN GSGGMSFGGG  120
GGGVISFGGG GGGGSGISFG GGGSESLDFT FRTGAGANRS EGSSHGGSRE GIGGNEGTIG  180
YRGPGYNPNF SHADEYPPSQ EAVQTQRQPI DLNVLSNKET RRQYRIDDRR HIYTEIIARN  240
GTGNRLKHGV SKAAALACKC PRRIVQRETR GALVFVLQTI RELSPKAFVI VEQGAGHNYA  300
ALFYALDMAL LRYDVRHARV EQFHFGAEIH NVVGCEGVAR VERNERADQW RRRMSRAGFL  360
SMPFKMAAKA REWLEENAGG SGYTVAEEKG RLVCLDGRAS PSSLPRAGNA RDTDGDQFLA  420
CWPLSNTSQC SQYPRPRVRV RTRYVRARWI GCEKSDRGRS HLRPTPPAAA GPCLFRLATP  480
ATRGGGDHGA STPACS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A077RXI70.0A0A077RXI7_WHEAT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-17scarecrow-like 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]