PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF069400030CFD_t1 | ||||||||
Common Name | TRAES_3BF069400030CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 449aa MW: 46983.4 Da PI: 5.8173 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.4 | 1.5e-09 | 251 | 298 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq TRAES3BF069400030CFD_t1 251 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 298 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.24E-16 | 245 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.85E-10 | 245 | 302 | No hit | No description |
PROSITE profile | PS50888 | 15.256 | 247 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-17 | 249 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 251 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 253 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MNCGPPDQLP PATAGFLNLN WDSSMDAGGH PSPASGSAAA TEGLALHGIS PRPQHYGAGT 60 PLGSPTKLNL SMMGHLENLM PMGSLDQFLA DPGFAERAAR LSGFDARGGY GGGPAQFGLP 120 DDGPVGALKE LELGSARDDS SVSDPASAGA GMALKGGSDG NARKRKAAGG SKGKGKDASM 180 STTSAKEDSA SKRCKSTSME DAEENSGKGN AAQSSSENGG KKQGKDGASK LPEPPKDFIH 240 VRARRGEATD SHSLAERVRR EKISQRMKLL QDLVPGCNKV VGKAVMLDEI INYVQSLQRQ 300 VEFLSMKLAT VNPQLDFNNL PSLLAKDMQQ QSCGQLQQGS SHFPLEASGA PLPYMGQGNG 360 DPLGCGMSDG GMGDDQGAMH PLDQAFCRPM GSSQQQQQHF LSDAASQVGA FWQDLQSVVQ 420 MDMGQSQELA TSSNSYDGSL QTVHMKMEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354628 | 0.0 | AK354628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009E13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155800.1 | 0.0 | transcription factor bHLH77-like isoform X2 | ||||
TrEMBL | A0A077S6T6 | 0.0 | A0A077S6T6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_C259B70D6.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP919 | 38 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 2e-60 | bHLH family protein |
Publications ? help Back to Top | |||
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