PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF069400030CFD_t1
Common NameTRAES_3BF069400030CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 449aa    MW: 46983.4 Da    PI: 5.8173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF069400030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-09251298455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  TRAES3BF069400030CFD_t1 251 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 298
                              8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.24E-16245316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-10245302No hitNo description
PROSITE profilePS5088815.256247297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-17249315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6251298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10253303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MNCGPPDQLP PATAGFLNLN WDSSMDAGGH PSPASGSAAA TEGLALHGIS PRPQHYGAGT  60
PLGSPTKLNL SMMGHLENLM PMGSLDQFLA DPGFAERAAR LSGFDARGGY GGGPAQFGLP  120
DDGPVGALKE LELGSARDDS SVSDPASAGA GMALKGGSDG NARKRKAAGG SKGKGKDASM  180
STTSAKEDSA SKRCKSTSME DAEENSGKGN AAQSSSENGG KKQGKDGASK LPEPPKDFIH  240
VRARRGEATD SHSLAERVRR EKISQRMKLL QDLVPGCNKV VGKAVMLDEI INYVQSLQRQ  300
VEFLSMKLAT VNPQLDFNNL PSLLAKDMQQ QSCGQLQQGS SHFPLEASGA PLPYMGQGNG  360
DPLGCGMSDG GMGDDQGAMH PLDQAFCRPM GSSQQQQQHF LSDAASQVGA FWQDLQSVVQ  420
MDMGQSQELA TSSNSYDGSL QTVHMKMEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546280.0AK354628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009E13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155800.10.0transcription factor bHLH77-like isoform X2
TrEMBLA0A077S6T60.0A0A077S6T6_WHEAT; Uncharacterized protein
STRINGTraes_3B_C259B70D6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-60bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]