PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF068500020CFD_t1 | ||||||||
Common Name | TRAES_3BF068500020CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25833.1 Da PI: 5.2524 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.6 | 6e-17 | 9 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS..EEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg..klyeyss 51 kri n+ r tf kRr g+lKKA EL vLC+++ +++f +g kl++y+s TRAES3BF068500020CFD_t1 9 KRIHNDVSRRATFGKRRRGLLKKARELAVLCGVDLGLLVFDDDGagKLFDYCS 61 79**************************************9985337888875 PP | |||||||
2 | K-box | 42 | 3.8e-15 | 89 | 177 | 10 | 97 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLes.LslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 + +++ l +a L++e + L+ + R+ GedL s + eL Leq+Le+ l ++R+ K++ l +q++e+ +k + l+++n L TRAES3BF068500020CFD_t1 89 VDDQQQPLADIIAGLRREHDRLEVSVRRQTGEDLPSaATAAELDDLEQRLERVLGEVREMKDKPLEQQLDESYHKVHTLEDQNSFL 174 55667888888999********************7725789********************************************* PP K-box 95 rkk 97 r+ TRAES3BF068500020CFD_t1 175 RRL 177 985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.764 | 1 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-25 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-24 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.2E-18 | 10 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-15 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-15 | 91 | 176 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.551 | 93 | 184 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGRGRTEMKR IHNDVSRRAT FGKRRRGLLK KARELAVLCG VDLGLLVFDD DGAGKLFDYC 60 SPNTSWSELI ERYESITNHK FQFQGINHVD DQQQPLADII AGLRREHDRL EVSVRRQTGE 120 DLPSAATAAE LDDLEQRLER VLGEVREMKD KPLEQQLDES YHKVHTLEDQ NSFLRRLMGE 180 EGQQRAAVEA SAVAPKLPAT AFGGSFPEVE EEELTALRLW PRQLPDV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-103 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153391.1 | 1e-117 | MADS-box transcription factor 29-like | ||||
TrEMBL | A0A077RQ62 | 1e-165 | A0A077RQ62_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PEE9 | 1e-165 | A0A446PEE9_TRITD; Uncharacterized protein | ||||
STRING | EMT14878 | 1e-112 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19518 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 6e-16 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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