PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF066700010CFD_t1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 1088aa MW: 122235 Da PI: 7.405

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF066700010CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.6	5e-14	16	67	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le+++ + +yp+ e+ +e A+++gLt +qV++WF+ rR ke++ TRAES3BF066700010CFD_t1 16 KKSPLQIQMLESFYSEVQYPKPEDLTEYAASVGLTYNQVRIWFKERRRKERR 67 66899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.382	8	68	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-13	10	72	IPR009057	Homeodomain-like
SMART	SM00389	2.9E-14	10	72	IPR001356	Homeobox domain
CDD	cd00086	1.64E-8	15	58	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-14	15	73	IPR009057	Homeodomain-like
Pfam	PF00046	2.2E-11	16	67	IPR001356	Homeobox domain
PROSITE profile	PS50827	10.183	312	371	IPR018501	DDT domain
SMART	SM00571	0.0017	312	371	IPR018501	DDT domain
Pfam	PF02791	4.2E-7	314	366	IPR018501	DDT domain
Pfam	PF15612	1.1E-5	590	621	IPR028942	WHIM1 domain
Pfam	PF15613	1.5E-10	713	784	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1088 aa Download sequence Send to blast
MMAKGFLAKS DNAGTKKSPL QIQMLESFYS EVQYPKPEDL TEYAASVGLT YNQVRIWFKE 60 RRRKERRHME AAEVYMETQA TARSNWPRCS SSRSSNSSQS PMQDTTGHHS YQDQSVLKKR 120 KIMSPTAQRF TLPFENNDPV RKHGKGKGLM TVWHAMYSQT AEIQDCSSFI DETGCLRSLR 180 PFEDFGGKLA QVQKQTLPRK KVNKKSRSSP SKRKVPCGRV TDLKEHPPVE CHLSVDESES 240 SELRTEQATL VDDEELELSE LQAGPNPLRC SAHISSTGRH GCPLCKDLLA RFPPPSVRMK 300 QPFPTKPWES SPEMVKKLFQ VVRFVYTHFG SMDVHPFTFD EFAQAFHDKD SSLLGKVHVS 360 LLKLLMLNTE RGSGSVFVPR SSKDSRFSSF LNFVREQEFD VNFWIKSLNS LTWVEILRQV 420 LVASGFGSDH HMLNRNFFNK EKNQMVKYGL RPRTLKGELF TLLSKKGSGG LKVAELAKSP 480 QIIGLNLSGA SEVEQLIFST LSSDITLFEK IAPCAYRLRV DPRIKGKEDP RSDTEDSGTV 540 DNDGDASSSG DESDGPQESY PEHESRIVRW RQKNVHKNMN KCSEIDESYS GERWLLGLME 600 GEYSDLSIDE KLDCLVALID VVSGAGSVPR LEEPQSVLSN IQRAQSHASG GKIKKCTRTI 660 YQSSDEYLNR PGSSHSFDSS MQGQSGSLRS QDYIADSGAN ESPTGFAHQP QIVLLGSDRR 720 YNNYWLFLGP CRADDPGHRR VYFESSEDGH WEVIDSPQDL LSLLSVLDIR GTREAHLLAS 780 MKKRQSCLFE GMKKHLEDGC VVALTASSDS SRSETSSGNR YSPKPSSGDG ASPLSDIDSA 840 SVPIYLAGNL QNASSAIGIE VGRRSDEKML KWERLQALDK WIWTSFYSSL TAVKCGKRSF 900 KESLVHCESC HDLYWRDEKH CRICHSTFEV GFDLEERYAI HVATCREPED LYDVPNHKVL 960 PSQLQALKAA IHAIEARMPT AAFAGLWMKS SHNLWVKRLR RTSSLPELLQ VLVDFVGAFD 1020 EDWLYQSSSA VSFSSYLDDI TVYFQTMPQT TSAVALWVVK LDALIAPHLA QADSGRGLGK 1080 GSIQTSMY

Sequence ? help Back to Top

Protein Sequence Length: 1088 aa Download sequence Send to blast

MMAKGFLAKS DNAGTKKSPL QIQMLESFYS EVQYPKPEDL TEYAASVGLT YNQVRIWFKE  60
RRRKERRHME AAEVYMETQA TARSNWPRCS SSRSSNSSQS PMQDTTGHHS YQDQSVLKKR  120
KIMSPTAQRF TLPFENNDPV RKHGKGKGLM TVWHAMYSQT AEIQDCSSFI DETGCLRSLR  180
PFEDFGGKLA QVQKQTLPRK KVNKKSRSSP SKRKVPCGRV TDLKEHPPVE CHLSVDESES  240
SELRTEQATL VDDEELELSE LQAGPNPLRC SAHISSTGRH GCPLCKDLLA RFPPPSVRMK  300
QPFPTKPWES SPEMVKKLFQ VVRFVYTHFG SMDVHPFTFD EFAQAFHDKD SSLLGKVHVS  360
LLKLLMLNTE RGSGSVFVPR SSKDSRFSSF LNFVREQEFD VNFWIKSLNS LTWVEILRQV  420
LVASGFGSDH HMLNRNFFNK EKNQMVKYGL RPRTLKGELF TLLSKKGSGG LKVAELAKSP  480
QIIGLNLSGA SEVEQLIFST LSSDITLFEK IAPCAYRLRV DPRIKGKEDP RSDTEDSGTV  540
DNDGDASSSG DESDGPQESY PEHESRIVRW RQKNVHKNMN KCSEIDESYS GERWLLGLME  600
GEYSDLSIDE KLDCLVALID VVSGAGSVPR LEEPQSVLSN IQRAQSHASG GKIKKCTRTI  660
YQSSDEYLNR PGSSHSFDSS MQGQSGSLRS QDYIADSGAN ESPTGFAHQP QIVLLGSDRR  720
YNNYWLFLGP CRADDPGHRR VYFESSEDGH WEVIDSPQDL LSLLSVLDIR GTREAHLLAS  780
MKKRQSCLFE GMKKHLEDGC VVALTASSDS SRSETSSGNR YSPKPSSGDG ASPLSDIDSA  840
SVPIYLAGNL QNASSAIGIE VGRRSDEKML KWERLQALDK WIWTSFYSSL TAVKCGKRSF  900
KESLVHCESC HDLYWRDEKH CRICHSTFEV GFDLEERYAI HVATCREPED LYDVPNHKVL  960
PSQLQALKAA IHAIEARMPT AAFAGLWMKS SHNLWVKRLR RTSSLPELLQ VLVDFVGAFD  1020
EDWLYQSSSA VSFSSYLDDI TVYFQTMPQT TSAVALWVVK LDALIAPHLA QADSGRGLGK  1080
GSIQTSMY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153548.1	0.0	homeobox-DDT domain protein RLT3-like isoform X2
TrEMBL	A0A3B6FI33	0.0	A0A3B6FI33_WHEAT; Uncharacterized protein
TrEMBL	A0A446PGH7	0.0	A0A446PGH7_TRITD; Uncharacterized protein
STRING	MLOC_6327.3	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-135	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]